Structure of PDB 9c3d Chain A Binding Site BS02

Receptor Information
>9c3d Chain A (length=224) Species: 471854 (Dyadobacter fermentans DSM 18053) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QTPDKSFKTDDLIVQKLTDHTYQHLTYLQTQTFGKVPCNGLIVFDGGEAV
IFDTPADDATSEKVIRWVEDSLKCKVKAVIATHFHEDCVGGLKAFHEHGI
PSYATNKTIAFDKEHKFPVPQKGFDNKLELNVGTKPVVAAFYGEGHTRDN
IIGYFPSEKVMFGGCLIKEVDATKGNLADANVDVWPATVANIRKQYSDVK
VVIPGHGKIGGSELLDYTIKLFSQ
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain9c3d Chain A Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB9c3d Crystal structure of metallo-beta-lactamase superfamily protein CcrA-like_MBL-B1 from Dyadobacter fermentans
Resolution1.85 Å
Binding residue
(original residue number in PDB)		D106 C184 H225
Binding residue
(residue number reindexed from 1)		D87 C165 H206
Annotation score1
Gene Ontology
Molecular Function
GO:0008800 beta-lactamase activity
GO:0016787 hydrolase activity
Biological Process
GO:0017001 antibiotic catabolic process
GO:0046677 response to antibiotic
Cellular Component
GO:0042597 periplasmic space

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:9c3d, PDBe:9c3d, PDBj:9c3d
PDBsum9c3d
PubMed
UniProtC6W709

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