Structure of PDB 9bfy Chain A Binding Site BS02

Receptor Information
>9bfy Chain A (length=170) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SMTEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE
TSLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAINNTKSFEDIHHYREQ
IKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTR
QGVDDAFYTLVREIRKHKEK
Ligand information
Ligand IDA1AOL
InChIInChI=1S/C51H67N7O8/c1-10-43(60)56-21-18-34(28-56)48(62)55(8)45(30(3)4)47(61)53-41-24-32-22-35(25-36(59)23-32)33-16-17-42-38(26-33)39(46(57(42)11-2)37-14-12-19-52-44(37)31(5)65-9)27-51(6,7)29-66-50(64)40-15-13-20-58(54-40)49(41)63/h12,14,16-17,19,22-23,25-26,30-31,34,40-41,45,54,59H,10-11,13,15,18,20-21,24,27-29H2,1-9H3,(H,53,61)
InChIKeyIOEUVNYCYLOKMG-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCC(=O)N1CCC(C1)C(=O)N(C)C(C(C)C)C(=O)NC2Cc3cc(cc(c3)O)-c4ccc5c(c4)c(c(n5CC)c6cccnc6C(C)OC)CC(COC(=O)C7CCCN(C2=O)N7)(C)C
CACTVS 3.385CCn1c2ccc3cc2c(CC(C)(C)COC(=O)[CH]4CCC[N](N4)C(=O)[CH](Cc5cc(O)cc3c5)NC(=O)[CH](C(C)C)N(C)C(=O)[CH]6CCN(C6)C(=O)CC)c1c7cccnc7[CH](C)OC
ACDLabs 12.01CCC(=O)N1CCC(C1)C(=O)N(C)C(C(C)C)C(=O)NC1Cc2cc(cc(O)c2)c2ccc3c(c2)c(CC(C)(C)COC(=O)C2CCCN(N2)C1=O)c(n3CC)c1cccnc1C(C)OC
OpenEye OEToolkits 2.0.7CCC(=O)N1CC[C@@H](C1)C(=O)N(C)[C@@H](C(C)C)C(=O)N[C@H]2Cc3cc(cc(c3)O)-c4ccc5c(c4)c(c(n5CC)c6cccnc6[C@H](C)OC)CC(COC(=O)[C@@H]7CCCN(C2=O)N7)(C)C
CACTVS 3.385CCn1c2ccc3cc2c(CC(C)(C)COC(=O)[C@@H]4CCC[N@@](N4)C(=O)[C@H](Cc5cc(O)cc3c5)NC(=O)[C@H](C(C)C)N(C)C(=O)[C@H]6CCN(C6)C(=O)CC)c1c7cccnc7[C@H](C)OC
FormulaC51 H67 N7 O8
Name(3R)-N-[(2S)-1-{[(1M,8R,10R,14S,21M)-22-ethyl-4-hydroxy-21-{2-[(1R)-1-methoxyethyl]pyridin-3-yl}-18,18-dimethyl-9,15-dioxo-16-oxa-10,22,28-triazapentacyclo[18.5.2.1~2,6~.1~10,14~.0~23,27~]nonacosa-1(25),2(29),3,5,20,23,26-heptaen-8-yl]amino}-3-methyl-1-oxobutan-2-yl]-N-methyl-1-propanoylpyrrolidine-3-carboxamide (non-preferred name)
ChEMBL
DrugBank
ZINC
PDB chain9bfy Chain A Residue 202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9bfy Translational and Therapeutic Evaluation of RAS-GTP Inhibition by RMC-6236 in RAS-Driven Cancers.
Resolution1.26 Å
Binding residue
(original residue number in PDB)
C12 P34 I36 E37 A59 Y64 M67 Y71
Binding residue
(residue number reindexed from 1)
C13 P35 I37 E38 A60 Y65 M68 Y72
Annotation score1
Enzymatic activity
Enzyme Commision number 3.6.5.2: small monomeric GTPase.
External links
PDB RCSB:9bfy, PDBe:9bfy, PDBj:9bfy
PDBsum9bfy
PubMed
UniProtP01116|RASK_HUMAN GTPase KRas (Gene Name=KRAS)

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