Structure of PDB 8yfr Chain A Binding Site BS02

Receptor Information
>8yfr Chain A (length=1384) Species: 460519 (Komagataella phaffii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SQFPYSSAPLRSVKEVQFGLLSPEEIRAISVVKIEYPEIMDESRQRPREG
GLNDPKLGSIDRNFKCQTCGEGMAECPGHFGHMELAKPVFHIGFIPKIKK
VCECICMNCGKLLLDETNPTMAQAIRIRDPKKRFNAVWQLCKTKMVCECG
NTQPVVRKDGMKLWGTWRKLLTPGEILNVFKHISPEDCFRLGFNEDYARP
EWMIITVLPVPPPQVRPSIAMDETTQGQDDLTHKLSDILKANINVQKLEM
DGSPQHIINEVEQLLQFHVATYMDNDIAGQPQALQKSGRPVKAIRARLKG
KEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPISIAKTLSYPETVT
QYNIHRLTEYVRNGPNEHPGAKYVIRDNGDRIDLRYHKRAGDIVLQYGWK
VERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD
FDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGV
RKMTLRDTFIEYEQVMNMLFWVPSWDGVVPQPAILKPKPLWTGKQLLSIA
IPSGIHLQRTDGGNSLLSPKDNGMLIVDGKVMFGVVDKKTVGSGGGGLIH
TVMREKGPKICAELFGNIQKVVNYWLLHNGFSIGIGDAIADASTMKEITH
AISSAKEQVQEIIYKAQHNELELKPGMTLRESFEGEVSRTLNDARDSAGR
SAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQMVEGKRIAFGFAD
RSLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKT
AETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFLYGEDGLDGTQVERQ
TIDTIPGSDKAFHKRYYVDLMDEKNSIKPDVIEYAADILGDVELQKELNS
EYEQLVSDRKFLREIVFVNGDHNWPLPVNLRRIIQNAQQIFHLDRAKASD
LTIPEIIHGVRDLCKKLFVLRGENELIKEAQQNATSLFQCLVRARLATRR
ILEEFRLNRDAFEWVLGTIEAQFQRSLVHPGEMVGVIAAQSIGEPATQMN
VTLGVPRLKEILNVAKNIKTPALTVYLDREIALDIEKAKVIQSSIEYTTL
KNVTSATEIYYDPDPTSTVIEEDFDTVEAYFSQSPWLLRLELDRARMLDK
QLTMNQVADKISEVFSDDLFVMWSEDNADKLIIRCRVIEEDQMLKRIEAH
MLDLIALRGIPGISKVYMVKHKVSVPDESGEYKNEELWALETDGINLAEV
MAVPGVDSSRTYSNSFVEILSVLGIEATRSSLYKEILNVIAFDGSYVNYR
HMALLVDVMTSRGYLMAITRTGALMRCSFEETVEILFEAGAAAELDDCRG
VSENVMLGQLAPMGTGAFDVMIDEKLLTSLPADY
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain8yfr Chain A Residue 1802 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8yfr Structural basis of eukaryotic transcription termination by the Rat1 exonuclease complex.
Resolution3.4 Å
Binding residue
(original residue number in PDB)		C107 C148 C168
Binding residue
(residue number reindexed from 1)		C106 C147 C149
Annotation score1
External links