Structure of PDB 8xhd Chain A Binding Site BS02

Receptor Information
>8xhd Chain A (length=398) Species: 1093098 (Streptomyces albogriseolus 1-36) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GSHMVKKLRHLSDGYWDSAARLGVHGAVLQAVPGGRLSAPDGRVAVNMSS
YSYLGLDESPRIIDAAIAALRSNMVLNSSLGRVRMTLPLLEEAECALGDL
FGADVATLNSCSAAAWATLPVLASGLLTDGVAPVMVFDKRAHFCMASLKS
LCADETRVETIRHNDVDALADICRKNKRVAYVCDSVYSTGGTLAPLEELF
ALQKEFGLFLYFDEAHSTSVIGDMGRGYVLDRMGAINDSTMLITSLNKGF
GASGGAIVFGPRDDDRKRKIIQRSSGPLMWSQRLNTPALGAIIESAKLHR
SEALPELQAKLHSNIALFDGLVRAAGQGNSVPIRYLELGSEVDTLEASAY
LFDNGFYVEPDFFPIVSRGAAGLRARIRSSMSTADIEQFAHVWHKLGV
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain8xhd Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8xhd Structural and mechanistic investigations on CC bond forming alpha-oxoamine synthase allowing L-glutamate as substrate.
Resolution2.7 Å
Binding residue
(original residue number in PDB)		W286 S287 Q288
Binding residue
(residue number reindexed from 1)		W280 S281 Q282
Annotation score1
Enzymatic activity
Enzyme Commision number 2.3.1.47: 8-amino-7-oxononanoate synthase.
Gene Ontology
Molecular Function
GO:0008483 transaminase activity
GO:0030170 pyridoxal phosphate binding
Biological Process
GO:0009058 biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:8xhd, PDBe:8xhd, PDBj:8xhd
PDBsum8xhd
PubMed38642679
UniProtA0A6B9KSL0

[Back to BioLiP]