Structure of PDB 8xcm Chain A Binding Site BS02

Receptor Information
>8xcm Chain A (length=540) Species: 376620 (Gluconobacter japonicus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NETLSADVVIIGAGICGSLLAHKLVRNGLSVLLLDAGPRRDRSQIVENWR
NMPPDNKSQYDYATPYPSVPWAPHTNYFPDNNYLIVKGPDRTAYKQGIIK
GVGGTTWHWAASSWRYLPNDFKLHSTYGVGRDYAMSYDELEPYYYEAECE
MGVMGPNGEEITPSAPRQNPWPMTSMPYGYGDRTFTEIVSKLGFSNTPVP
QARNSRPYDGRPQCCGNNNCMPICPIGAMYNGVYAAIKAEKLGAKIIPNA
VVYAMETDAKNRITAISFYDPDKQSHRVVAKTFVIAANGIETPKLLLLAA
NDRNPHGIANSSDLVGRNMMDHPGIGMSFQSAEPIWAGGGSVQMSSITNF
RDGDFRSEYAATQIGYNNTAQNSRAGMKALSMGLVGKKLDEEIRRRTAHG
VDIYANHEVLPDPNNRLVLSKDYKDALGIPHPEVTYDVGEYVRKSAAISR
QRLMDIAKAMGGTEIEMTPYFTPNQHITGGTIMGHDPRDSVVDKWLRTHD
HSNLFLATGATMAASGTVNSTLTMAALSLRAADAILNDLK
Ligand information
Ligand IDF3S
InChIInChI=1S/3Fe.4S
InChIKeyFCXHZBQOKRZXKS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385S1[Fe]S[Fe]2S[Fe]1S2
OpenEye OEToolkits 2.0.7S1[Fe]2S[Fe]3[S]2[Fe]1S3
FormulaFe3 S4
NameFE3-S4 CLUSTER
ChEMBL
DrugBank
ZINC
PDB chain8xcm Chain A Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8xcm Structural and electrochemical elucidation of biocatalytic mechanisms in direct electron transfer-type D-fructose dehydrogenase.
Resolution3.08 Å
Binding residue
(original residue number in PDB)		R205 C216 C217 G218 N219 N220 N221 C222 C226 I228 A230
Binding residue
(residue number reindexed from 1)		R203 C214 C215 G216 N217 N218 N219 C220 C224 I226 A228
Annotation score1
Enzymatic activity
Enzyme Commision number 1.1.5.14: fructose 5-dehydrogenase.
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0047904 fructose 5-dehydrogenase activity
GO:0050660 flavin adenine dinucleotide binding
Biological Process
GO:0006000 fructose metabolic process
Cellular Component
GO:0005886 plasma membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8xcm, PDBe:8xcm, PDBj:8xcm
PDBsum8xcm
PubMed
UniProtM1VMF7|FDHL_GLUJA Fructose dehydrogenase large subunit (Gene Name=fdhL)

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