Structure of PDB 8w78 Chain A Binding Site BS02

Receptor Information
>8w78 Chain A (length=410) Species: 7227 (Drosophila melanogaster) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GDYDLVVVGGGIVGAASAREIVLRHPSLKVAVLEKECKLAKHQSGHNSGV
IHAGIYYKPGTLKARLCVEGMHLAYAYLDEKKIPYKKTGKLIVATDEKEV
KLLKDLEKRGIANNVPDLRMIEGSEIQEIEPYCQGVMALHSPHTGIVDWG
LVTEHYGQDFKQCGGDIYLDFNVSKFTETDYPVTIHGAKPGQTVRTKNVL
TCGGLQSDLLAEKTGCPRDPRIVPFRGEYLLLTKEKQHMVKGNIYPVPDP
RFPFLGVHFTPRMDGSIWLGPNAVLALKREGYTWGDINLFELFDALRYPG
FVKMASKYIGFGLSEMSKSWFINLQIKALQKYIPDITEYDIQRGPAGVRA
QAMDLDGNLVDDFVFDRGQGSGALAKRVLHCRNAPSPGATSSLAIAKMIA
DKIENEFSIG
Ligand information
Ligand IDAKG
InChIInChI=1S/C5H6O5/c6-3(5(9)10)1-2-4(7)8/h1-2H2,(H,7,8)(H,9,10)
InChIKeyKPGXRSRHYNQIFN-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C(O)C(=O)CCC(=O)O
OpenEye OEToolkits 1.7.6C(CC(=O)O)C(=O)C(=O)O
CACTVS 3.385OC(=O)CCC(=O)C(O)=O
FormulaC5 H6 O5
Name2-OXOGLUTARIC ACID
ChEMBLCHEMBL1686
DrugBankDB08845
ZINCZINC000001532519
PDB chain8w78 Chain A Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8w78 Structure and biochemical characterization of L-2-hydroxyglutarate dehydrogenase and its role in the pathogenesis of L-2-hydroxyglutaric aciduria
Resolution2.81 Å
Binding residue
(original residue number in PDB)		S88 H92 Y289 F298 L299 H302 R393
Binding residue
(residue number reindexed from 1)		S48 H52 Y245 F254 L255 H258 R349
Annotation score5
Enzymatic activity
Enzyme Commision number 1.1.99.2: L-2-hydroxyglutarate dehydrogenase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003973 (S)-2-hydroxy-acid oxidase activity
GO:0016491 oxidoreductase activity
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
GO:0047545 2-hydroxyglutarate dehydrogenase activity
GO:0061758 2-hydroxyglutarate dehydrogenase activity, forward reaction
Cellular Component
GO:0005739 mitochondrion

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Molecular Function
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Cellular Component
External links
PDB RCSB:8w78, PDBe:8w78, PDBj:8w78
PDBsum8w78
PubMed37995940
UniProtQ9VJ28

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