Structure of PDB 8um0 Chain A Binding Site BS02

Receptor Information
>8um0 Chain A (length=363) Species: 195103 (Clostridium perfringens ATCC 13124) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PLILFNKDNNIWNSKYFRIPNIQLLNDGTILTFSDIRYNGPDNHAYIDIA
SARSTDFGKTWSYDIAMKNNRIDSTYSRVMDSTTVITNTGRIILIAGSWN
TNGNWAMTTSTRRSDWSVQMIYSDDNGLTWSNKIDLTKDSSKVKNQPSNT
IGWLGGVGSGIVMDDGTIVMPAQISLRENNENNYYSLIIYSKDNGETWTM
GNKVPNSNTSENMVIELDGALIMSTRYDYSGYRAAYISHDLGSTWEIYEP
LNGKVLTGKGSGCQGSFIKATTSNGHRIGLISAPKNTKGEYIRDNIAVYM
IDFDDLSKRVQEICIPYPKDGNKLGGGYSCLSFKNSHLSIVYEANGNIEY
QDLTPYYSLINKQ
Ligand information
Ligand IDX1F
InChIInChI=1S/C15H23NO11/c1-6(17)16-11-9(20)4-15(24,14(22)23)27-13(11)12(26-8(3)19)10(21)5-25-7(2)18/h9-13,20-21,24H,4-5H2,1-3H3,(H,16,17)(H,22,23)/t9-,10+,11+,12+,13+,15+/m0/s1
InChIKeyNIHNZVQGPXTJRU-FSTWUICMSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC(=O)NC1C(CC(OC1C(C(COC(=O)C)O)OC(=O)C)(C(=O)O)O)O
ACDLabs 12.01OC(=O)C1(O)CC(O)C(NC(C)=O)C(O1)C(OC(C)=O)C(O)COC(C)=O
CACTVS 3.385CC(=O)N[C@@H]1[C@@H](O)C[C@@](O)(O[C@H]1[C@H](OC(C)=O)[C@H](O)COC(C)=O)C(O)=O
CACTVS 3.385CC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](OC(C)=O)[CH](O)COC(C)=O)C(O)=O
OpenEye OEToolkits 2.0.7CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](COC(=O)C)O)OC(=O)C)(C(=O)O)O)O
FormulaC15 H23 N O11
Name5-acetamido-7,9-di-O-acetyl-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid
ChEMBL
DrugBank
ZINC
PDB chain8um0 Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8um0 A "terminal" case of glycan catabolism: structural and enzymatic characterization of the sialidases of Clostridium perfringens.
Resolution2.46 Å
Binding residue
(original residue number in PDB)
R37 N62 M99 N123 W124 Y203 R245 R312 Y347
Binding residue
(residue number reindexed from 1)
R18 N43 M80 N104 W105 Y184 R226 R293 Y328
Annotation score1
External links