Structure of PDB 8ujh Chain A Binding Site BS02
Receptor Information
>8ujh Chain A (length=526) Species:
508771
(Toxoplasma gondii ME49) [
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EGAGPGRLHGRLGIKPDGQPGYTRAPSPPTDLSMPQALARGGGFNLYLSD
HLELDRTAPDARHASCRQLHYDLSTLPKASVIIVFYNEPFSTLMRSVHSV
LNGTPPQILEELILVDDGSTLPYIREDGNQQLVEYLKLLPAKVRLIRNEV
RKGIVGARMKGIRASRAPIFAILDSHIEVSPQWLEPLLLRIKEDSRRVVM
PQIDGIDAETFKHIAGGIGCKLGFLWKLMEHSYEGHQTARLPPEERQPSP
TDFQTSPAMAGGLFAANKAFFFDVGAYDEDFQFWGTENLELSFRLWQCGG
VLECAPCSRVYHIFRKGGSGYSSPGDSITINKMRTMLWMDEYADLAWRVI
GKPRVNYRPESLEKRREWRKRKGCKSFRWFMENVFPEGDVVTLDDVPYLG
PLRNDKIGMCLDNMGWASPGHAVGLEYCHGGDTQTFMFFRKVGHVMPVND
DEACLQPSGRLDWCRGTAQFWWDFTSSGQLMFRETKQCLSAFGRKLRMVE
CDDTDPYQIWSWTAYNPPDTFTFPSV
Ligand information
Ligand ID
UDP
InChI
InChI=1S/C9H14N2O12P2/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(22-8)3-21-25(19,20)23-24(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKey
XCCTYIAWTASOJW-XVFCMESISA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.0
C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)OP(=O)(O)O)O)O
CACTVS 3.370
O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
CACTVS 3.370
O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
OpenEye OEToolkits 1.7.0
C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)O)O)O
ACDLabs 12.01
O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O
Formula
C9 H14 N2 O12 P2
Name
URIDINE-5'-DIPHOSPHATE
ChEMBL
CHEMBL130266
DrugBank
DB03435
ZINC
ZINC000004490939
PDB chain
8ujh Chain A Residue 701 [
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Receptor-Ligand Complex Structure
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PDB
8ujh
A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Resolution
2.65 Å
Binding residue
(original residue number in PDB)
V186 F187 Y188 D219 R253 I256 D276 S277 H278 H414 Y423
Binding residue
(residue number reindexed from 1)
V84 F85 Y86 D117 R151 I154 D174 S175 H176 H312 Y321
Annotation score
3
Enzymatic activity
Enzyme Commision number
2.4.1.41
: polypeptide N-acetylgalactosaminyltransferase.
External links
PDB
RCSB:8ujh
,
PDBe:8ujh
,
PDBj:8ujh
PDBsum
8ujh
PubMed
38710711
UniProt
A0A125YMZ8
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