Structure of PDB 8tws Chain A Binding Site BS02

Receptor Information
>8tws Chain A (length=294) Species: 317 (Pseudomonas syringae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RALPGPSQRQLEVYDQCLIGAARWPDDSSKSNTPENRAYCQSMYNSIRSA
GDEISRGGITSFEELWGRATEWRLSKLQRGEPLYSAFASERTSDTDAVTP
LVKPYKSVLARVVDHEDAHDEIMQDNLFGDLNVKVYRQTAYLHGNVIPLN
TFRVATDTEYLRDRVAHLRTELGAKALKQHLQRYNPDRIDHTNASYLPII
KDHLNDLYRQAISSDLSQAELISLIARTHWWAASAMPDQRGSAAKAEFAA
RAIASAHGIELPPFRNGNVSDIEAMLSGEEEFVEKYRSLLDSDC
Ligand information
Ligand IDAWU
InChIInChI=1S/C15H24N2O16P2/c1-5-8(19)10(21)12(23)14(30-5)32-35(27,28)33-34(25,26)29-4-6-9(20)11(22)13(31-6)17-3-2-7(18)16-15(17)24/h2-3,5-6,8-14,19-23H,4H2,1H3,(H,25,26)(H,27,28)(H,16,18,24)/t5-,6+,8-,9+,10+,11+,12+,13+,14+/m0/s1
InChIKeyDRDCJEIZVLVWNC-SLBWPEPYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6C[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)O)O)O
CACTVS 3.385C[C@@H]1O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@H](O)[C@H](O)[C@H]1O
CACTVS 3.385C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 2.0.6CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)O)O)O
FormulaC15 H24 N2 O16 P2
Name[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate
ChEMBL
DrugBank
ZINCZINC000008551429
PDB chain8tws Chain A Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8tws Pseudomonas effector AvrB is a glycosyltransferase that rhamnosylates plant guardee protein RIN4.
Resolution2.85 Å
Binding residue
(original residue number in PDB)
G46 Y65 Y131 M262 R266 G267 A269 A270
Binding residue
(residue number reindexed from 1)
G20 Y39 Y105 M236 R240 G241 A243 A244
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0005576 extracellular region

View graph for
Cellular Component
External links
PDB RCSB:8tws, PDBe:8tws, PDBj:8tws
PDBsum8tws
PubMed38354245
UniProtP13835|AVRB_PSESG Avirulence protein B (Gene Name=avrB)

[Back to BioLiP]