Structure of PDB 8rzb Chain A Binding Site BS02

Receptor Information
>8rzb Chain A (length=151) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PVRSLNCTLRDSQQKSLVMSGPYELKALHLQGQDMEQQVVFSMSFVQGES
NDKIPVALGLKEKNLYLSCVLKDDKPTLQLESVDPKNYPKKKMEKRFVFN
KIEINNKLEFESAQFPNWYISTSQAENMPVFLGGTKGGQDITDFTMQFVS
S
Ligand information
Ligand IDA1H4A
InChIInChI=1S/C35H37F3N6O7S/c1-23-7-8-24(20-28(23)35(36,37)38)27-19-25(34(47)48)21-42-22-29(40-31(27)42)33(46)44-14-13-43(52(49,50)26-5-3-2-4-6-26)11-9-30(44)32(45)39-10-12-41-15-17-51-18-16-41/h2-8,19-22,30H,9-18H2,1H3,(H,39,45)(H,47,48)/t30-/m0/s1
InChIKeyCYRHEZSFDUZNDQ-PMERELPUSA-N
SMILES
SoftwareSMILES
CACTVS 3.385Cc1ccc(cc1C(F)(F)F)c2cc(cn3cc(nc23)C(=O)N4CCN(CC[C@H]4C(=O)NCCN5CCOCC5)[S](=O)(=O)c6ccccc6)C(O)=O
OpenEye OEToolkits 2.0.7Cc1ccc(cc1C(F)(F)F)c2cc(cn3c2nc(c3)C(=O)N4CCN(CCC4C(=O)NCCN5CCOCC5)S(=O)(=O)c6ccccc6)C(=O)O
OpenEye OEToolkits 2.0.7Cc1ccc(cc1C(F)(F)F)c2cc(cn3c2nc(c3)C(=O)N4CCN(CC[C@H]4C(=O)NCCN5CCOCC5)S(=O)(=O)c6ccccc6)C(=O)O
CACTVS 3.385Cc1ccc(cc1C(F)(F)F)c2cc(cn3cc(nc23)C(=O)N4CCN(CC[CH]4C(=O)NCCN5CCOCC5)[S](=O)(=O)c6ccccc6)C(O)=O
FormulaC35 H37 F3 N6 O7 S
Name8-[4-methyl-3-(trifluoromethyl)phenyl]-2-[[(7S)-7-(2-morpholin-4-ylethylcarbamoyl)-4-(phenylsulfonyl)-1,4-diazepan-1-yl]carbonyl]imidazo[1,2-a]pyridine-6-carboxylic acid;
LIPID FRAGMENT
ChEMBL
DrugBank
ZINC
PDB chain8rzb Chain D Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8rzb Ligandability Assessment of IL-1 beta by Integrated Hit Identification Approaches.
Resolution1.836 Å
Binding residue
(original residue number in PDB)
R4 D54 E105
Binding residue
(residue number reindexed from 1)
R3 D52 E103
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:8rzb, PDBe:8rzb, PDBj:8rzb
PDBsum8rzb
PubMed38728572
UniProtP01584|IL1B_HUMAN Interleukin-1 beta (Gene Name=IL1B)

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