Structure of PDB 8qlp Chain A Binding Site BS02

Receptor Information

>8qlp Chain A (length=412) Species: 1904864 (Bacillales bacterium)

ARNKIFISHAAPDDNDFTKWLALKLIALGYEVWCDVLFFWKVIDKEIREG
AIKFLLATSEIAIKRDGVLKEIAVAEKVKKQLKDDNFIIPLIIDENLSYD
DLPPEIIRLNAVDFKKSWAVGLQDLLKALDDQKVEKNSPDPDKSNALYQQ
IFLHNKGIIEREEIYDSNWFSILSFPKELRFHDYEKLMPKGFDVRELTYP
AVRYKNYLCTFAWEYDFMHQLPKTETYNSSQTIRIPTEEILSGKYDSPFI
GNFECQRLIVQLLNKAFELRMKEKGVREYPMSNKMGYWFEKGKLEKDKFN
KVLLVGKQKDKHWHFGISAAGKLYPFPVLMISSHIFFTKDGKELIESKKI
QHAARRRQGKNWWNDDWRNKLLAFVKYLSDDENSFYLEVGSEEKIYISNE
PVQFVGKVSYNM

Ligand information

>8qlp Chain D (length=20)

actaatagattagagccgtc

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8qlp Target DNA-dependent activation mechanism of the prokaryotic immune system SPARTA.
• Resolution: 3.14 Å
• Binding residue (original residue number in PDB): R201 R263 V266 Q267 K271 K328 H358 R362 R363 K366
• Binding residue (residue number reindexed from 1): R195 R257 V260 Q261 K265 K322 H352 R356 R357 K360

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Mon Feb 17 06:54:49 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8qlp', asym_id = 'A', bs = 'BS02', title = 'Target DNA-dependent activation mechanism of the prokaryotic immune system SPARTA.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8qlp', asym_id='A', bs='BS02', title='Target DNA-dependent activation mechanism of the prokaryotic immune system SPARTA.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0007165', uniprot = '', pdbid = '8qlp', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0007165', uniprot='', pdbid='8qlp', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>