Structure of PDB 8qc6 Chain A Binding Site BS02

Receptor Information
>8qc6 Chain A (length=366) Species: 1849032 (Arthrobacter sp. U41) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EAVRTIRYGLIGAGHMAREHVRNLALIPGSLITAVSDPQPSSLEETVAEI
GYEVTTFPDHRELLVSGLVDALVIASPNDTHLDILKDIFSNQMKLPVLVE
KPVCTTAAQADELESLAAGYSAPVWVAMEYRYMPPVQELIQAAHGGKLGN
VFMLSIVEHRFPFLHKVDAWNRFNERTGGTLVEKCCHFFDLMRLILQDEP
TRIYASGGHDVNHMDELYEGRVSDMIDNAYVVVDFKSGRRAMLELSMFAE
GSKFQERISIVGDAAKIECLIPVAASHWIEGDESEAVVEFSPRSPLGPET
HEVPVDEAVLAAGAHHGSTYYEHLGYRKAILGEGPVEVTVADGLQSVRMG
LAAERSIIEGRPVELL
Ligand information
Ligand IDR7R
InChIInChI=1S/C6H12O8S/c7-3-2(1-15(11,12)13)14-6(10)5(9)4(3)8/h2-10H,1H2,(H,11,12,13)/t2-,3-,4+,5-,6+/m1/s1
InChIKeyQFBWOLBPVQLZEH-DVKNGEFBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)S(=O)(=O)O
OpenEye OEToolkits 2.0.7C(C1C(C(C(C(O1)O)O)O)O)S(=O)(=O)O
CACTVS 3.385O[C@H]1O[C@H](C[S](O)(=O)=O)[C@@H](O)[C@H](O)[C@H]1O
CACTVS 3.385O[CH]1O[CH](C[S](O)(=O)=O)[CH](O)[CH](O)[CH]1O
FormulaC6 H12 O8 S
Namesulfoquinovose;
[(2~{S},3~{S},4~{S},5~{R},6~{S})-3,4,5,6-tetrakis(oxidanyl)oxan-2-yl]methanesulfonic acid
ChEMBL
DrugBank
ZINC
PDB chain8qc6 Chain A Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8qc6 Widespread Family of NAD + -Dependent Sulfoquinovosidases at the Gateway to Sulfoquinovose Catabolism.
Resolution2.4 Å
Binding residue
(original residue number in PDB)
K107 Y136 R166 F169 L170 K172 E189 K190 H193 H321
Binding residue
(residue number reindexed from 1)
K101 Y130 R160 F163 L164 K166 E183 K184 H187 H315
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding

View graph for
Molecular Function
External links
PDB RCSB:8qc6, PDBe:8qc6, PDBj:8qc6
PDBsum8qc6
PubMed38100472
UniProtA0A1C9WRL0

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