Structure of PDB 8ph7 Chain A Binding Site BS02

Receptor Information
>8ph7 Chain A (length=129) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
DGNGMNAWVAWRNRCKGTDVQAWIRGCRL
Ligand information
Ligand IDZWH
InChIInChI=1S/C13H12N2.2C4H6O4.C2H4O2.2Ru/c1-3-7-12(8-4-1)14-11-15-13-9-5-2-6-10-13;2*5-3(6)1-2-4(7)8;1-2(3)4;;/h1-10H,11H2;2*3H,1-2H2,(H,7,8);2H,1H3;;/q4*-2;2*+4
InChIKeyGPMJGBXYFGQHON-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385C[CH]1O[Ru]23O[CH](CCC(O)=O)O[Ru](O1)(O[CH](CCC(O)=O)O2)N(CN3c4ccccc4)c5ccccc5
CACTVS 3.385C[C@H]1O[Ru]23O[C@H](CCC(O)=O)O[Ru](O1)(O[C@@H](CCC(O)=O)O2)N(CN3c4ccccc4)c5ccccc5
OpenEye OEToolkits 2.0.7CC1O[Ru]234N(CN([Ru]2(O1)(OC(O3)CCC(=O)O)OC(O4)CCC(=O)O)c5ccccc5)c6ccccc6
FormulaC23 H28 N2 O10 Ru2
Name[Ru2Cl(N,N'-bis(4-fluorophenyl)formamidinate)(1,1-ethanediol)(succinic acid)2]
ChEMBL
DrugBank
ZINC
PDB chain8ph7 Chain A Residue 203 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8ph7 Steric hindrance and charge influence on the cytotoxic activity and protein binding properties of diruthenium complexes.
Resolution1.406 Å
Binding residue
(original residue number in PDB)		K33 N37 F38
Binding residue
(residue number reindexed from 1)		K33 N37 F38
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.17: lysozyme.
Gene Ontology
Molecular Function
GO:0003796 lysozyme activity
GO:0005515 protein binding
GO:0016231 beta-N-acetylglucosaminidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0042802 identical protein binding
Biological Process
GO:0016998 cell wall macromolecule catabolic process
GO:0031640 killing of cells of another organism
GO:0042742 defense response to bacterium
GO:0050829 defense response to Gram-negative bacterium
GO:0050830 defense response to Gram-positive bacterium
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum

View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8ph7, PDBe:8ph7, PDBj:8ph7
PDBsum8ph7
PubMed37660867
UniProtP00698|LYSC_CHICK Lysozyme C (Gene Name=LYZ)

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