Structure of PDB 8oo1 Chain A Binding Site BS02

Receptor Information
>8oo1 Chain A (length=409) Species: 83334 (Escherichia coli O157:H7) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIG
TLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCL
VSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQT
PDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVD
TTPIINAHWFALPTLYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIV
KKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYST
WVIGGAAIFAILLSCVPKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVL
IESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLS
LIFKLISVL
Ligand information
Ligand IDDMU
InChIInChI=1S/C22H42O11/c1-2-3-4-5-6-7-8-9-10-30-21-19(29)17(27)20(14(12-24)32-21)33-22-18(28)16(26)15(25)13(11-23)31-22/h13-29H,2-12H2,1H3/t13-,14-,15-,16+,17-,18-,19-,20-,21-,22-/m1/s1
InChIKeyWOQQAWHSKSSAGF-WXFJLFHKSA-N
SMILES
SoftwareSMILES
CACTVS 3.370CCCCCCCCCCO[CH]1O[CH](CO)[CH](O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH]1O
ACDLabs 12.01O(CCCCCCCCCC)C2OC(C(OC1OC(CO)C(O)C(O)C1O)C(O)C2O)CO
OpenEye OEToolkits 1.7.6CCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O
OpenEye OEToolkits 1.7.6CCCCCCCCCCOC1C(C(C(C(O1)CO)OC2C(C(C(C(O2)CO)O)O)O)O)O
CACTVS 3.370CCCCCCCCCCO[C@@H]1O[C@H](CO)[C@@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O
FormulaC22 H42 O11
NameDECYL-BETA-D-MALTOPYRANOSIDE;
DECYLMALTOSIDE
ChEMBL
DrugBank
ZINCZINC000085482724
PDB chain8oo1 Chain B Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8oo1 Interdomain-linkers control conformational transitions in an SLC23 elevator transporter
Resolution3.7 Å
Binding residue
(original residue number in PDB)
L353 I354 K357 Y360 S370 L373
Binding residue
(residue number reindexed from 1)
L350 I351 K354 Y357 S367 L370
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0015205 nucleobase transmembrane transporter activity
GO:0015210 uracil transmembrane transporter activity
GO:0015293 symporter activity
GO:0015505 uracil:monoatomic cation symporter activity
GO:0022857 transmembrane transporter activity
GO:0042803 protein homodimerization activity
Biological Process
GO:0015857 uracil transport
GO:0055085 transmembrane transport
GO:0098721 uracil import across plasma membrane
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8oo1, PDBe:8oo1, PDBj:8oo1
PDBsum8oo1
PubMed39209842
UniProtP0AGM7|URAA_ECOLI Uracil permease (Gene Name=uraA)

[Back to BioLiP]