Structure of PDB 8k88 Chain A Binding Site BS02

Receptor Information
>8k88 Chain A (length=468) Species: 35554 (Geobacter sulfurreducens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SQLAAHSTIPEPLLLFKDNRTDTHPLRGLSQYGPYSACFNLPGQVRLAYL
APTEHMRKLDAIVRELQNPATPKEATNYYVEYGGFEKVFKVPLVMPQEHL
RCLALDECHGVAANGNGLALADKIVQSMSGLFRQKHAFDVLLVYLPASWK
KCFEYDGFDLHDRIKAKVAPLNLPIQIINDTALTRQCRANVMWGVSVALY
AKAGGIPWKLADWDKDEAYIGLSYAIKKNAEGQEYTTCCSQVFDPDGTGF
EFVAYDTREFITDRKGNPYLSYQEMQSVLSKSLHLYQSSHNGRMPRKIFI
HKTTHFTEDEIQGAFDSFSSSTEIELVQIIQSTNWYGLKVDGKKGDKPVA
PASYPVDRGLYQPLTESECLLWTQGSVMGVNQQNPGQPVFKEAALTPLPN
PIMLRRFSGNGGWHATCSSILALTKVDWNNNTLYKKLPVTLVYSQVFADV
VKQTPEIVNEIYDYRFFM
Ligand information
>8k88 Chain D (length=21) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
auaaugguuucuuagacgucg
.....................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8k88 Structural Basis of prokaryotic Argonaute System
Resolution2.6 Å
Binding residue
(original residue number in PDB)		F158 E159 D164 H166 K170 I182 N184 A187 R190 V196 V200 Q238 Y240 G271 Y274 Q379 L400 T401 N434 N435 N436 K440 K441 M473
Binding residue
(residue number reindexed from 1)		F153 E154 D159 H161 K165 I177 N179 A182 R185 V191 V195 Q233 Y235 G266 Y269 Q374 L395 T396 N429 N430 N431 K435 K436 M468
Gene Ontology
Molecular Function
GO:0003674 molecular_function
Biological Process
GO:0008150 biological_process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:8k88, PDBe:8k88, PDBj:8k88
PDBsum8k88
PubMed38923459
UniProtQ74DF5

[Back to BioLiP]