Structure of PDB 8ile Chain A Binding Site BS02

Receptor Information

>8ile Chain A (length=170) Species: 10498 (African swine fever virus BA71V) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MLTLIQGKKIVNHLRSRLAFELIKILSKNIVAVGSLRREEKMLNDVDLLI
IVPEKKLLKHVLPNIRIKGLSFSVKVCGERKCVLFIEWEKKTYQLDLFTA
LAEEKPYAIFHFTGPVSYLIRIRAALKKKNYKLNQYGLFKNQTLVPLKIT
TEKELIKELGFTYRIPKKRL

Ligand information

Ligand ID

InChI

InChI=1S/Mn/q+2

InChIKey

WAEMQWOKJMHJLA-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mn+2]
CACTVS 3.341	[Mn++]

Formula

Name

MANGANESE (II) ION

PDB chain

8ile Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8ile Structural Insight into Polymerase Mechanism via a Chiral Center Generated with a Single Selenium Atom.
Resolution	3.0 Å
Binding residue (original residue number in PDB)	D49 D51
Binding residue (residue number reindexed from 1)	D45 D47
Annotation score	1

Enzymatic activity

Enzyme Commision number

2.7.7.7: DNA-directed DNA polymerase.

Gene Ontology

	Molecular Function
GO:0003677	DNA binding
GO:0003887	DNA-directed DNA polymerase activity
GO:0016779	nucleotidyltransferase activity
GO:0046872	metal ion binding

	Biological Process
GO:0006259	DNA metabolic process
GO:0006281	DNA repair
GO:0006303	double-strand break repair via nonhomologous end joining
GO:0071897	DNA biosynthetic process

	Cellular Component
GO:0044423	virion component

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Cellular Component

External links

PDB	RCSB:8ile, PDBe:8ile, PDBj:8ile
PDBsum	8ile
PubMed	37958741
UniProt	P42494\|DPOLX_ASFB7 Repair DNA polymerase X (Gene Name=Ba71V-97)

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