Structure of PDB 8i16 Chain A Binding Site BS02

Receptor Information
>8i16 Chain A (length=639) Species: 1410628 (Lachnospiraceae bacterium ND2006) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VSPRPRPRYREERTLVRKLLPRPGQSKQEFRENVKKLRKAFLQFNADVSG
VCQWAIQFRPRYGKPAEPTETFWKFFLEPETSLPPNDSRSPEFRRLQAFE
AAAGINGAAALDDPAFTNELRDSILAVASRPKTKEAQRLFSRLKDYQPAH
RMILAKVAAEWIESRYRRAHQNWERNYEEWKKEKQEWEQNHPELTPEIRE
AFNQIFQQLEVKEKRVRICPAARLLQNKDNCQYAGKNKHSVLCNQFNEFK
KNHLQGKAIKFFYKDAEKYLRCGLQSLKPNVQGPFREDWNKYLRYMNLKE
ETLRGKNGGRLPHCKNLGQECEFNPHTALCKQYQQQLSSRPDLVQHDELY
RKWRREYWREPRKPVFRYPSVKRHSIAKIFGENYFQADFKNSVVGLRLDS
MPAGQYLEFAFAPWPRNYRPQPGETEISSVHLHFVGTRPRIGFRFRVPHK
RSRFDCTQEELDELRSRTFPRKAQDQKFLEAARKRLLETFPGNAEQELRL
LAVALGTDSARAAFFIGKTFQQAFPLKIVKIEKLYTVHTARMIRDWARLN
ARQIIQLAEENQVDLIVLESLRGFRPPGYENLDQEKKRRVAFFAHGRIRR
KVTEKAVERGMRVVTVPYLASSVDENAARVLGRVFWGEI
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain8i16 Chain A Residue 802 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8i16 Structural transitions upon guide RNA binding and their importance in Cas12g-mediated RNA cleavage.
Resolution2.24 Å
Binding residue
(original residue number in PDB)
H248 C252 C323 C330
Binding residue
(residue number reindexed from 1)
H239 C243 C314 C321
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8i16, PDBe:8i16, PDBj:8i16
PDBsum8i16
PubMed37729124
UniProtA0A7C2YU39

[Back to BioLiP]