Structure of PDB 8hw8 Chain A Binding Site BS02

Receptor Information
>8hw8 Chain A (length=326) Species: 51029 (Heterodera glycines) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HRIVGYYQGIRPLTNDQAKKLTHLILAFSTPDSQGNLSPLSSVLKQALKA
GKSANGALKVMIAIGGGGFDPAIFTSLASNSGTRKSFINNIVSYLKTNEL
DGCDIAWAFPTSSDKAIFVTFLRDLKKAMAPSGAVLSMASAASAFYLDPG
YDLPGIESAVDFINVMCYDYYGSWTKTSTGPNSPLFKGGSADPSDTLNSN
WTMNYHLMKVYNRAKLNMGVPFYGKSWTNVGAPLNGDGLWRQLGTYGTEL
AWRNMGKSFDMTKTTYHKTAKTAYIYDTATKNFLTFDNPQSLKDKAKYVA
EKGIGGIMIWSIDQDDDKLSLLNSVS
Ligand information
Ligand ID68X
InChIInChI=1S/C22H39NO6/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-18(25)23-19-21(27)20(26)17(16-24)29-22(19)28/h7-8,14-15,17,19-22,24,26-28H,2-6,9-13,16H2,1H3,(H,23,25)/b8-7+,15-14-/t17-,19-,20+,21+,22+/m0/s1
InChIKeyBQDHAOHXPSOCQH-OQVMBZPUSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCCCCCC=CCCCCCC=CC(=O)N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O
OpenEye OEToolkits 2.0.7CCCCCC/C=C/CCCCC/C=C\C(=O)N[C@H]1[C@H]([C@@H]([C@@H](O[C@H]1O)CO)O)O
OpenEye OEToolkits 2.0.7CCCCCCC=CCCCCCC=CC(=O)NC1C(C(C(OC1O)CO)O)O
CACTVS 3.385CCCCCC\C=C\CCCCC\C=C/C(=O)N[C@@H]1[C@H](O)O[C@@H](CO)[C@@H](O)[C@@H]1O
FormulaC22 H39 N O6
Name(2~{Z},9~{E})-~{N}-[(2~{R},3~{S},4~{R},5~{S},6~{S})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]hexadeca-2,9-dienamide
ChEMBL
DrugBank
ZINC
PDB chain8hw8 Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8hw8 Crystal structure of Heterodera glycines chitinase 2 D129A/E131A mutant in complex with nodulation factor SmNF-V (C16:2, S)
Resolution1.57 Å
Binding residue
(original residue number in PDB)
Q31 I33 G91 E272 W333 Q337
Binding residue
(residue number reindexed from 1)
Q8 I10 G68 E249 W310 Q314
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.14: chitinase.
External links