Structure of PDB 8gd7 Chain A Binding Site BS02

Receptor Information

>8gd7 Chain A (length=631) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

LSIIDVASDQNLFQTFIKEWRCKKRFSISLACEKIRSGDDTLVVGLAVCW
GGRDAYYFSLGLDPSLTLKDRMWYLQSCLRKESDKECSVVIYDFIQSYKI
LLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELPLLEGM
ETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVF
RKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGH
SFSFTSSDDIAEVLFLELKLPPGGQFSTSKDVLNKLKALHPLPGLILEWR
RITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTATGRITFTEPNIQN
VPRDFEIKMGGSGGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLS
HDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGM
GAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTI
LGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLE
TFHSTFKSHGHREGMLQCPIRGGFFILQLHDELLYEVAEEDVVQVAQIVK
NEMESAVKLSVKLKVKVKIGASWGELKDFDV

Ligand information

>8gd7 Chain F (length=10) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

gtcgcagcgc

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8gd7 Discovery of a small-molecule inhibitor that traps Pol theta on DNA and synergizes with PARP inhibitors.
Resolution	3.24 Å
Binding residue (original residue number in PDB)	N2205 K2209 R2241 Q2250 N2251 V2252 R2254 R2315 H2539
Binding residue (residue number reindexed from 1)	N304 K308 R340 Q349 N350 V351 R353 R372 H580

External links

PDB	RCSB:8gd7, PDBe:8gd7, PDBj:8gd7
PDBsum	8gd7
PubMed	38580648
UniProt	O75417\|DPOLQ_HUMAN DNA polymerase theta (Gene Name=POLQ)

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