Structure of PDB 8etr Chain A Binding Site BS02

Receptor Information
>8etr Chain A (length=471) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KDYRKKYRKYVRSRFQCILNKRYTRLRLIKEHIKMELLFDPDEPVHTVVF
QGAAGIGKTILARKMMLDWASGTLYQDRFDYLFYIHCREVSLVTQRSLGD
LIMSCCPDPNPPIHKIVRKPSRILFLMDGFDELQGAFDEHIGPLCTDWQK
AERGDILLSSLIRKKLLPEASLLITTRPVALEKLQHLLDHPRHVEILGFS
EAKRKEYFFKYFSDEAQARAAFSLIQENEVLFTMCFIPLVCWIVCTGLKQ
QMESGKSLAQTSKTTTAVYVFFLSSLLCAHLWGLCSLAADGIWNQKILFE
ESDLRNHGLQKADVSAFLRMNLFQKEVKFYSFIHMTFQEFFAAMYYLLEE
SRDVTVLLENYGKFEKGYLIFVVRFLFGLVNQERSYLEKKLSCKISQQIR
LELLKWIEVKAKAKKLQIQPSQLELFYCLYEMQEEDFVQRAMDYFPKIEI
NLSTRMDHMVSSFCIENCHRV
Ligand information
Ligand IDWTN
InChIInChI=1S/C20H25N5O4S/c1-21-14-10-25-19(29-11-14)17(9-22-25)30(27,28)24-20(26)23-18-15-6-2-4-12(15)8-13-5-3-7-16(13)18/h8-9,14,21H,2-7,10-11H2,1H3,(H2,23,24,26)/t14-/m0/s1
InChIKeyNDRARVKETDZHBS-AWEZNQCLSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CNC1Cn2c(c(cn2)S(=O)(=O)NC(=O)Nc3c4c(cc5c3CCC5)CCC4)OC1
CACTVS 3.385CN[CH]1COc2n(C1)ncc2[S](=O)(=O)NC(=O)Nc3c4CCCc4cc5CCCc35
ACDLabs 12.01O=C(Nc1c2CCCc2cc2CCCc21)NS(=O)(=O)c1cnn2CC(COc12)NC
CACTVS 3.385CN[C@@H]1COc2n(C1)ncc2[S](=O)(=O)NC(=O)Nc3c4CCCc4cc5CCCc35
OpenEye OEToolkits 2.0.7CN[C@H]1Cn2c(c(cn2)S(=O)(=O)NC(=O)Nc3c4c(cc5c3CCC5)CCC4)OC1
FormulaC20 H25 N5 O4 S
Name(6S,8R)-N-[(1,2,3,5,6,7-hexahydro-s-indacen-4-yl)carbamoyl]-6-(methylamino)-6,7-dihydro-5H-pyrazolo[5,1-b][1,3]oxazine-3-sulfonamide
ChEMBLCHEMBL5219789
DrugBank
ZINC
PDB chain8etr Chain A Residue 703 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8etr Overcoming Preclinical Safety Obstacles to Discover ( S )- N -((1,2,3,5,6,7-Hexahydro- s -indacen-4-yl)carbamoyl)-6-(methylamino)-6,7-dihydro-5 H -pyrazolo[5,1- b ][1,3]oxazine-3-sulfonamide (GDC-2394): A Potent and Selective NLRP3 Inhibitor.
Resolution3.5 Å
Binding residue
(original residue number in PDB)
A227 A228 R351 I411 T439 R578 L628 E629 Y632
Binding residue
(residue number reindexed from 1)
A53 A54 R177 I237 T265 R374 L423 E424 Y427
Annotation score1
Enzymatic activity
Enzyme Commision number 3.6.4.-
External links
PDB RCSB:8etr, PDBe:8etr, PDBj:8etr
PDBsum8etr
PubMed36279149
UniProtQ96P20|NLRP3_HUMAN NACHT, LRR and PYD domains-containing protein 3 (Gene Name=NLRP3)

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