Structure of PDB 8eem Chain A Binding Site BS02

Receptor Information
>8eem Chain A (length=440) Species: 1697 (Corynebacterium ammoniagenes) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KVVIIGAGFAGLVAARELQTAGIEYEILEAKDRIGGRAWTEERMGRPLEL
GATWVHWFQAHTWTEIMRYGQRTEITASPSGNDAHWVTDGKVVKGTEDDL
DEKLTAAMGVTYEGSEEYFPNPHDPLWVLSDDFDGPAEVRERFLSDDQTN
AIDLVKEAGFDQETIDLVDAFWCAGYIGDPYTGSALMAKQWGALSDNRYR
VMEDITLKWKLNNGMRSLYDGIAGDLNTDIRLNTPVAKVEHHDNGATVTT
ESGEVIEASAVICTVPVGALSNIEFSPALPDAVQSVIDDKWNSQGAKIWI
KIKGHHRFLGYAPKPAKMSVVRSEYFMDDDTTILVGFGYDNTNIDLNSIE
DAQAVINQWRDDLEVVDTTGHNWVADKWAGQAWGTLRKGQFTQGWSLFDD
IDSQLFFAGSDYAYGWRGVCVDGALEKGMTTARQVINSMR
Ligand information
Ligand IDE5E
InChIInChI=1S/C8H11NO3/c9-4-8(12)5-1-2-6(10)7(11)3-5/h1-3,8,10-12H,4,9H2/p+1/t8-/m0/s1
InChIKeySFLSHLFXELFNJZ-QMMMGPOBSA-O
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6c1cc(c(cc1C(C[NH3+])O)O)O
CACTVS 3.385[NH3+]C[CH](O)c1ccc(O)c(O)c1
OpenEye OEToolkits 2.0.6c1cc(c(cc1[C@H](C[NH3+])O)O)O
CACTVS 3.385[NH3+]C[C@H](O)c1ccc(O)c(O)c1
FormulaC8 H12 N O3
NameNoradrenaline
ChEMBL
DrugBank
ZINC
PDB chain8eem Chain A Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8eem Structural Insights into the Substrate Range of a Bacterial Monoamine Oxidase.
Resolution1.56 Å
Binding residue
(original residue number in PDB)		F175 L211 F341 W387
Binding residue
(residue number reindexed from 1)		F171 L207 F337 W383
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 30 11:10:59 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8eem', asym_id = 'A', bs = 'BS02', title = 'Structural Insights into the Substrate Range of a Bacterial Monoamine Oxidase.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8eem', asym_id='A', bs='BS02', title='Structural Insights into the Substrate Range of a Bacterial Monoamine Oxidase.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0016491', uniprot = '', pdbid = '8eem', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016491', uniprot='', pdbid='8eem', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>