Structure of PDB 8cnr Chain A Binding Site BS02

Receptor Information
>8cnr Chain A (length=548) Species: 523845 (Methanothermococcus thermolithotrophicus DSM 2095) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRPSKMFCYQCQETAKNTGCTIIGVCGKKDNVANLQDLLVYTVKGLAVVR
ENLGYSNDKTDRYIVDALFTTITNVNFDDKDIIEKIKEGLALREEAASKS
TCPGCGGDLPDCATWTADSDDEIIKKANSLEVSVLATENEDVRSLRELLT
YGVKGIAAYLHHAMVLGYDNKDIHKFIRKALVATTDDSLSADELTALVLE
CGKYAVDTMALLDKANTETYGHPEITEVDIGVRNNPGILISGHDLKDLEQ
LLEQTKGTGVDVYTHSEMLPAHYYPAFKKYDHFVGNYGGSWWRQKEEFEA
FNGPIVMTTNCLVPPAESYKDRIYTTGVVGFPGLKRIPEDENGNKDFSEV
IEQAKKCAPPKQLETGKIVGGFAHNQVLALADKVVEAVKSGAIRKFVVMA
GCDGRHPSREYYTEFAKKLPNDTVILTAGCAKYRYNKLGLGDIGGIPRVL
DAGQCNDCYSLAVIALKLKEVFELDDINDLPIAFNVAWYEQKAVAVLLAL
LYLGVKDIVLGPTLPAFLSPNVAKVLVEKFGISGITTVDEDIERLINK
Ligand information
Ligand IDSF4
InChIInChI=1S/4Fe.4S
InChIKeyLJBDFODJNLIPKO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7[S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
CACTVS 3.385S1[Fe]S[Fe]1.S2[Fe]S[Fe]2
FormulaFe4 S4
NameIRON/SULFUR CLUSTER
ChEMBL
DrugBank
ZINC
PDB chain8cnr Chain A Residue 606 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8cnr Structural and biochemical elucidation of class I hybrid cluster protein natively extracted from a marine methanogenic archaeon.
Resolution1.45 Å
Binding residue
(original residue number in PDB)		C8 Y9 Q10 C11 T14 C20 G24 V25 C26 K28 T73
Binding residue
(residue number reindexed from 1)		C8 Y9 Q10 C11 T14 C20 G24 V25 C26 K28 T73
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 19:30:49 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8cnr', asym_id = 'A', bs = 'BS02', title = 'Structural and biochemical elucidation of class ...ly extracted from a marine methanogenic archaeon.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8cnr', asym_id='A', bs='BS02', title='Structural and biochemical elucidation of class ...ly extracted from a marine methanogenic archaeon.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003824,0005737,0016491,0016661,0051536', uniprot = '', pdbid = '8cnr', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824,0005737,0016491,0016661,0051536', uniprot='', pdbid='8cnr', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>