Structure of PDB 8cmw Chain A Binding Site BS02

Receptor Information
>8cmw Chain A (length=669) Species: 246194 (Carboxydothermus hydrogenoformans Z-2901) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PRFRDLEHTSKPSKADRVWEPKNRKRTIDPAALEMLEKAEKDGVKTAFDR
FVEMQPQCQFGYKGLCCRFCLQGPCRLPNDDPSKKGICGASAWTIAARSV
GTLILTGAAAHNEHARHIAHALKELAEGKAPDYKITDPDKLRRIAQRLGL
DTQGKDDMTLAKEVAELALEDFARLPGFGENLWIKTTLNKERLEKYDECN
IMPSGIFGDISDLLAQAHIGNDDDPVNITFSALRVALTDYAGMHIATDFS
DVLFGTPKPIVTEANLGVLDANKVNIAVHGHNPLLSEKVVDAAKELEEEA
KAAGAEGINIVGMCCTGNEVLMRRGVHLATSFASSELAIVTGAMDAVVVD
VQCIMPGLKQVTECYHTRLITTSNIAKMPGTYHVPFHIENALESAKEIVR
LGIEAFKQRVGKPVHIPEVKHKVVAGFSFEALMEIFAHVNQENPIRVLND
AILSGQLKGVVLFAGCNNLKRPQDESHITILKEMLKNDVFVVTTGCSAQA
FAKHGFLRPEALELAGEGLKSFIKMLEEKAGLQGQLPPAFFMGSCVDNTR
ASDILVAMAKDLGVDTPKVPFVASAPEAMSGKAVSIGTWFVTLGVPVHVG
TMPPLEGSELFYSITTQIASDVYGGYFMFEVDPVVAARKILNALEYRTWK
LGVHKQTAEKFETALCQNY
Ligand information
Ligand IDRQM
InChIInChI=1S/4Fe.Ni.4S
InChIKeyQGLWBXDZIHZONR-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385[Fe]S[Fe].S1[Fe]S[Ni]S[Fe]1
OpenEye OEToolkits 2.0.7[S]1([Fe]2[S]3[Fe]1[S]4[Fe]3[S]2[Ni]4)[Fe]
FormulaFe4 Ni S4
NameFe(3)-Ni(1)-S(4) cluster
ChEMBL
DrugBank
ZINC
PDB chain8cmw Chain A Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8cmw A225L variant of the CODH/ACS complex of C. hydrogenoformans
Resolution2.6 Å
Binding residue
(original residue number in PDB)		H282 C315 C316 F333 C354 G466 C467 C497 C546 S581 K583
Binding residue
(residue number reindexed from 1)		H281 C314 C315 F332 C353 G465 C466 C496 C545 S580 K582
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Wed Nov 27 10:54:44 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8cmw', asym_id = 'A', bs = 'BS02', title = 'A225L variant of the CODH/ACS complex of C. hydrogenoformans'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8cmw', asym_id='A', bs='BS02', title='A225L variant of the CODH/ACS complex of C. hydrogenoformans')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003824,0006091,0016151,0016491,0043885,0051539', uniprot = '', pdbid = '8cmw', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824,0006091,0016151,0016491,0043885,0051539', uniprot='', pdbid='8cmw', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>