Structure of PDB 8cdo Chain A Binding Site BS02

Receptor Information
>8cdo Chain A (length=478) Species: 358 (Agrobacterium tumefaciens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DRRALRIGVNGLPPSLEPINGISNTGPRIINQIFDALIRRDYFADGAKGN
NIKLVPALAESFERIDDKSIRFKLRQGVKFHNGAEMTAEDVAFTFSSERL
WGDEAIKTVPNGRNYSPNWDEPVVEDKYTVVLRTKTPSYLIEKYLGSWLG
PIVPKEYYKSLGAVAFGNKPIGTGPYKFRELVANDHVTLEANDGYWGDKP
TASTITYQVVAEPATRVAGLISGEYDIITTLTPDDMALVDGYSDLETRGT
LIENLHMFTFNMNQPIFQNKTLRRALALAVNRPLIVEALWKNKASIPNGF
NFEFNLKEAKRLVKESGYDGTPITYHTMGNYYANAVPALMMMIEMWKAAG
ITVVPKIFAPGTTPKDSDILIRNWSNGQWLTDGLTTMVSEFGPGRQVQKR
WGWKAPAEFNNLCDQVAQLKDGEERSAAFNRLRDIFEDEAPAVLMYQPYD
VYAARKDVQWSPVSFETMEFRGNLNFKH
Ligand information
Ligand IDFRU
InChIInChI=1S/C6H12O6/c7-1-3-4(9)5(10)6(11,2-8)12-3/h3-5,7-11H,1-2H2/t3-,4-,5+,6-/m1/s1
InChIKeyRFSUNEUAIZKAJO-ARQDHWQXSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04OC1C(O)C(OC1(O)CO)CO
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@](O1)(CO)O)O)O)O
CACTVS 3.341OC[CH]1O[C](O)(CO)[CH](O)[CH]1O
OpenEye OEToolkits 1.5.0C(C1C(C(C(O1)(CO)O)O)O)O
CACTVS 3.341OC[C@H]1O[C@](O)(CO)[C@@H](O)[C@@H]1O
FormulaC6 H12 O6
Namebeta-D-fructofuranose;
beta-D-fructose;
D-fructose;
fructose
ChEMBLCHEMBL604608
DrugBank
ZINCZINC000001529270
PDB chain8cdo Chain B Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8cdo A highly conserved ligand-binding site for AccA transporters of antibiotic and quorum-sensing regulator in Agrobacterium leads to a different specificity.
Resolution1.32 Å
Binding residue
(original residue number in PDB)		Y375 Y376 R416
Binding residue
(residue number reindexed from 1)		Y331 Y332 R372
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:1904680 peptide transmembrane transporter activity
Biological Process
GO:0015833 peptide transport
GO:0055085 transmembrane transport
Cellular Component
GO:0030288 outer membrane-bounded periplasmic space
GO:0042597 periplasmic space
GO:0043190 ATP-binding cassette (ABC) transporter complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8cdo, PDBe:8cdo, PDBj:8cdo
PDBsum8cdo
PubMed38058289
UniProtA5WYD2

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