Structure of PDB 8cay Chain A Binding Site BS02

Receptor Information
>8cay Chain A (length=491) Species: 358 (Agrobacterium tumefaciens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DRRALRIGVNGLPPSLEPINGISNTGPRIINQIFDALIRRDYFADGAKGN
NIKLVPALAESFERIDDKSIRFKLRQGVKFHNGAEMTAEDVAFTFSSERL
WGDEAIKTVPNGRNFSPNWDEPVVEDKYTVVLRTKTPSYLIEKYLGSWLG
PIVPKEYYKSLGAVAFGNKPIGTGPYKFRELVANDHVTLEANDGYWGDKP
TASTITYQVVAEPATRVAGLISGEYDIITTLTPDDMALVDGYSDLETRGT
LIENLHMFTFNMNQPIFQNKTLRRALALAVNRPLIVEALWKNKASIPNGF
NFPHYGATYDPKRKPMEFNLKEAKRLVKESGYDGTPITYHTMGNYYANAV
PALMMMIEMWKAAGITVVPKIFAPGTTPKDSDILIRNWSNGQWLTDGLTT
MVSEFGPGRGVQKRWGWKAPAEFNNLCDQVAQLKDGEERSAAFNRLRDIF
EDEAPAVLMYQPYDVYAARKDVQWSPVSFETMEFRGNLNFK
Ligand information
Ligand IDY45
InChIInChI=1S/C12H23O14P/c13-1-3-5(15)7(17)9(11(19)23-3)25-27(21,22)26-10-8(18)6(16)4(2-14)24-12(10)20/h3-20H,1-2H2,(H,21,22)/t3-,4-,5-,6-,7+,8+,9-,10-,11+,12+/m1/s1
InChIKeyDCDHSOINTWUWCZ-NCFXGAEVSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)OP(=O)(O)O[C@@H]2[C@H]([C@@H]([C@H](O[C@@H]2O)CO)O)O)O)O)O
CACTVS 3.385OC[CH]1O[CH](O)[CH](O[P](O)(=O)O[CH]2[CH](O)O[CH](CO)[CH](O)[CH]2O)[CH](O)[CH]1O
OpenEye OEToolkits 2.0.7C(C1C(C(C(C(O1)O)OP(=O)(O)OC2C(C(C(OC2O)CO)O)O)O)O)O
CACTVS 3.385OC[C@H]1O[C@H](O)[C@H](O[P](O)(=O)O[C@H]2[C@@H](O)O[C@H](CO)[C@@H](O)[C@@H]2O)[C@@H](O)[C@@H]1O
FormulaC12 H23 O14 P
NameAgrocinopine D-like (C2-C2 linked;
with two alpha-D-glucopyranoses);
Agrocinopine D-like;
bis[(2S,3R,4S,5S,6R)-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate;
D-glucose-2-phosphate-2-glucose
ChEMBL
DrugBank
ZINC
PDB chain8cay Chain A Residue 603 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8cay A highly conserved ligand-binding site for AccA transporters of antibiotic and quorum-sensing regulator in Agrobacterium leads to a different specificity.
Resolution1.626 Å
Binding residue
(original residue number in PDB)
P44 S53 N54 W178 Y375 Y376 S419 N420 G421 E434 E510
Binding residue
(residue number reindexed from 1)
P14 S23 N24 W148 Y345 Y346 S389 N390 G391 E404 E480
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:1904680 peptide transmembrane transporter activity
Biological Process
GO:0015833 peptide transport
GO:0055085 transmembrane transport
Cellular Component
GO:0030288 outer membrane-bounded periplasmic space
GO:0042597 periplasmic space
GO:0043190 ATP-binding cassette (ABC) transporter complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:8cay, PDBe:8cay, PDBj:8cay
PDBsum8cay
PubMed38058289
UniProtA5WYD2

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