Structure of PDB 8bjk Chain A Binding Site BS02
Receptor Information
>8bjk Chain A (length=353) Species:
7955
(Danio rerio) [
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PITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPA
RLATEEELALCHSSKHISIIKSSEHMKPRDLNRLGDEYNSIFISNESYTC
ALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAAL
TARYAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGA
FFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPIAR
EFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIIL
EGGYNLTSISESMSMCTSMLLGDSPPSLPLKTSATVSINNVLRAHAPFWS
SLR
Ligand information
Ligand ID
QXF
InChI
InChI=1S/C14H15ClN4O3S/c1-23(21,22)19(13-4-2-3-11(15)7-13)9-12-6-5-10(8-17-12)14(20)18-16/h2-8H,9,16H2,1H3,(H,18,20)
InChIKey
SBSZNKFUDSVSJK-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.385
C[S](=O)(=O)N(Cc1ccc(cn1)C(=O)NN)c2cccc(Cl)c2
OpenEye OEToolkits 2.0.7
CS(=O)(=O)N(Cc1ccc(cn1)C(=O)NN)c2cccc(c2)Cl
Formula
C14 H15 Cl N4 O3 S
Name
~{N}-[[5-(aminocarbamoyl)pyridin-2-yl]methyl]-~{N}-(3-chlorophenyl)methanesulfonamide
ChEMBL
DrugBank
ZINC
PDB chain
8bjk Chain A Residue 804 [
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Receptor-Ligand Complex Structure
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PDB
8bjk
Comprehensive Mechanistic View of the Hydrolysis of Oxadiazole-Based Inhibitors by Histone Deacetylase 6 (HDAC6).
Resolution
1.35 Å
Binding residue
(original residue number in PDB)
P464 S531 H574 G582 F583 D612 H614 F643 Y745
Binding residue
(residue number reindexed from 1)
P23 S90 H133 G141 F142 D171 H173 F202 Y304
Annotation score
1
Enzymatic activity
Enzyme Commision number
?
External links
PDB
RCSB:8bjk
,
PDBe:8bjk
,
PDBj:8bjk
PDBsum
8bjk
PubMed
37392419
UniProt
F8W4B7
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