Structure of PDB 8b23 Chain A Binding Site BS02

Receptor Information
>8b23 Chain A (length=702) Species: 2336 (Thermotoga maritima) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YVAALFFLIPLVALGFAAANFAAVVRKPEGTERMKEISSYIRSGADSFLA
HETKAIFKVAIVIAILLMIFTTWQTGVAFLLGAVMSASAGIVGMKMATRA
NVRVAEAARTTKKIGPALKVAYQGGSVMGLSVGGFALLGLVLVYLIFGKW
MGQVDNLNIYTNWLGINFVPFAMTVSGYALGCSIIAMFDRVGGGVYTKAA
DMAADLVGKTELNLPEDDPRNPATIADNVGDNVGDVAGLGADLLESFVGA
IVSSIILASYMFPIYVQKIGENLVHQVPKETIQALISYPIFFALVGLGCS
MLGILYVIVKKPSDNPQRELNISLWTSALLTVVLTAFLTYFYLKDLQGLD
VLGFRFGAISPWFSAIIGIFSGILIGFWAEYYTSYRYKPTQFLGKSSITG
MVISNGLSLGMKSVFPPTLTLVLGILFADYFAGLYGVAIAALGMLSFVAT
SVSVDSYGPIADNAGGISEMCELDPEVRKITDHLDAVGNTTAAIGKGFAI
GSAIFAALSLFASYMFSQISPSDIGKPPSLVLLLNMLDARVIAGALLGAA
ITYYFSGYLISAVTKAAMKMDYNRCIEITSDNALKQMGYPAFIAILTPLV
TGFLLGAEFVGGVLIGTVLSGAMLAILTANSGGAWDNAKKYLEAGNLEGY
GKGSEPHKALVIGDTVGDPLKDTVGPSLDILIKIMSVVSVIAVSIFKHVH
LF
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain8b23 Chain A Residue 804 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8b23 Towards automated crystallographic structure refinement with phenix.refine.
Resolution3.84 Å
Binding residue
(original residue number in PDB)		D232 D465
Binding residue
(residue number reindexed from 1)		D231 D462
Annotation score1
Enzymatic activity
Enzyme Commision number 7.2.3.1: Na(+)-exporting diphosphatase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0004427 inorganic diphosphate phosphatase activity
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0009678 diphosphate hydrolysis-driven proton transmembrane transporter activity
GO:0015081 sodium ion transmembrane transporter activity
GO:0030955 potassium ion binding
GO:0042803 protein homodimerization activity
GO:0046872 metal ion binding
Biological Process
GO:0006814 sodium ion transport
GO:0035725 sodium ion transmembrane transport
GO:1902600 proton transmembrane transport
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8b23, PDBe:8b23, PDBj:8b23
PDBsum8b23
PubMed38182815
UniProtQ9S5X0|HPPA_THEMA K(+)-stimulated pyrophosphate-energized sodium pump (Gene Name=hppA)

[Back to BioLiP]