Structure of PDB 8a1h Chain A Binding Site BS02

Receptor Information
>8a1h Chain A (length=516) Species: 666 (Vibrio cholerae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRYSVVRLILGDQLNHAHSWFSEHRDDVLYLIAELHQEQEYVRHHIQKQC
AFFAAMQAFADYLSAEGHHVWHLDLDASAQYNDLPDLIAQICQQVQADAF
QYQRPDEYRLLEQMANLRLSGITIGCVDTEHFLLPFAEIPEQFPASKAVL
MEHFYRRMRKRFGYLMTADGKPEGGQWNFDADNRNKLKSPDLLQLPTPLC
FDNPVASIKARIERHRIPSIGQVGESLLWPINRAQALSLLAHFCQICLPN
FGRFQDAMTAQHPHRWSLYHSRLSFALNSKLLSPREVIEATISAYRAAQG
QISLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQRPLPSYFWN
GQTKMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDQVDAWYLG
IYIDAIEWVELPNTRGMALFADGGLIATKPYSASGSYINKMSDYCASCAY
QVKLKSGEKACPLNSLYWRFMLKHRDRLANNPRIGMLYKTWDKMTSDSQQ
AILSTADAYLSQIESL
Ligand information
Ligand IDDLZ
InChIInChI=1S/C13H18N4O6/c1-5-6(2)17(3-7(19)10(21)8(20)4-18)11-9(14-5)12(22)16-13(23)15-11/h7-8,10,18-21H,3-4H2,1-2H3,(H,16,22,23)/t7-,8+,10-/m0/s1
InChIKeySXDXRJZUAJBNFL-XKSSXDPKSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C2N=C1N(C(=C(N=C1C(=O)N2)C)C)CC(O)C(O)C(O)CO
OpenEye OEToolkits 1.5.0CC1=C(N(C2=NC(=O)NC(=O)C2=N1)C[C@@H]([C@@H]([C@@H](CO)O)O)O)C
CACTVS 3.341CC1=C(C)N(C[CH](O)[CH](O)[CH](O)CO)C2=NC(=O)NC(=O)C2=N1
OpenEye OEToolkits 1.5.0CC1=C(N(C2=NC(=O)NC(=O)C2=N1)CC(C(C(CO)O)O)O)C
CACTVS 3.341CC1=C(C)N(C[C@H](O)[C@H](O)[C@H](O)CO)C2=NC(=O)NC(=O)C2=N1
FormulaC13 H18 N4 O6
Name1-deoxy-1-(6,7-dimethyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol;
6,7-dimethyl-8-(1'-D-ribityl) lumazine
ChEMBL
DrugBank
ZINCZINC000004096380
PDB chain8a1h Chain A Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8a1h Structural and Functional Analysis of a Prokaryotic (6-4) Photolyase from the Aquatic Pathogen Vibrio Cholerae † .
Resolution1.65 Å
Binding residue
(original residue number in PDB)
L30 G31 D32 A53 E54 L55 E58 Q59 Y61 H64 F72 M76 D126 E127 I426
Binding residue
(residue number reindexed from 1)
L10 G11 D12 A33 E34 L35 E38 Q39 Y41 H44 F52 M56 D106 E107 I406
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003674 molecular_function
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0008150 biological_process
Cellular Component
GO:0005575 cellular_component

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8a1h, PDBe:8a1h, PDBj:8a1h
PDBsum8a1h
PubMed36692077
UniProtQ9KLD7

[Back to BioLiP]