Structure of PDB 7zgy Chain A Binding Site BS02

Receptor Information
>7zgy Chain A (length=949) Species: 243230 (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SDFDALGGRVTTVETRVETVNNSLTGRIAALERNAFSVKPSLTIGYSVSR
TSRNFDVDRLFPLNADGTVANNAFTSGGIDTDTGAQRRDFGDFGNASDPV
VAGAAGLYGFADGVSYTVYFTDGSTATFDGLNPADYKVPTGKVIDTTKGR
NGFGFNNLARYKEGSTDIGISLGFDTSGQFSQVTSGTGGSLFSTAGRLQV
NQIDLNFGLVTGLPSDAYVDTNGNGKKDDGEATGRGTYLGSGGTAAILRD
PAGNVYRPVFFRFKNATTQFSVGNNPVIVTLGQQQKFYFSDYVFDNNYDG
RGDGFTVTVDGSNVPVIGAWKPQIKGVYGSRSGLDGTAEAGYGVYYRGVR
AQITPVGTLTAGIHYAQEGRDMFGAAQNTTSTPSDVTTYGADLHGKAFGV
ELHSEYATSRVRPNTANAAVQTSNAFYARVATRKDNLAFDLNTPAAKFGN
DTFGVSLYDLNYRKIDAGYNNVAGISEYGYGSYSRTSAQNIAYNPDTGVT
APFANLDRQAYTDANNDGTSDRNADGTVVATNTKIGQMGFGVKAAANLGP
VAIGGYYDTSTGANGDNANRMTEAGGSAKVAYSIFSLRGTYNTLDSNRPQ
IYRDAAGTQIIGDAKVRRYAVQADVTPGLGLFVGAYYRDVNVNGVRSTTD
RGLLGRGYLASSFEPGVGNNAYRTGLRCADNNFGTGTRDIDGVGGVLNPA
VNLDQSRTATCFTSYGVEAGHAGDNANALVKDLFFRVGYSRVYVPTTATA
TTGDFSGSVTYGDARYDRKVGVANVRLAGSFSTTNTQLDSRPAGTRGAVG
LIVRTDPLENVPFRPQFNGQVGYYTADNRVAAGNYNANATKYGAGVVLND
FLLPQTKIGVRYDGYMAQNRQYTPFDGDGTQGYFSDANNNRRTNLNGVYV
EGAYQDLIFSYGTYTLSQKDLNGVEYGSGINNGQPARGQTFKISYKVNF
Ligand information
Ligand IDJQ6
InChIInChI=1S/C39H73N2O15P/c1-5-7-9-10-11-12-13-14-15-16-17-18-19-20-21-23-34(45)41-35-37(47)36(46)32(25-42)55-39(35)52-28-33(38(48)40-24-22-8-6-2)56-57(49,50)53-27-31(54-30(4)44)26-51-29(3)43/h31-33,35-37,39,42,46-47H,5-28H2,1-4H3,(H,40,48)(H,41,45)(H,49,50)/t31-,32-,33-,35-,36+,37-,39+/m0/s1
InChIKeyZPGLDLNPYVCZJR-XTLGHBECSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCCCCCCCCCCCCCCCCC(=O)N[C@H]1[C@@H]([C@@H]([C@@H](O[C@H]1OC[C@@H](C(=O)NCCCCC)OP(=O)(O)OC[C@H](COC(=O)C)OC(=O)C)CO)O)O
CACTVS 3.385CCCCCCCCCCCCCCCCCC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1OC[CH](O[P](O)(=O)OC[CH](COC(C)=O)OC(C)=O)C(=O)NCCCCC
CACTVS 3.385CCCCCCCCCCCCCCCCCC(=O)N[C@H]1[C@H](O)[C@H](O)[C@H](CO)O[C@H]1OC[C@H](O[P](O)(=O)OC[C@H](COC(C)=O)OC(C)=O)C(=O)NCCCCC
OpenEye OEToolkits 2.0.7CCCCCCCCCCCCCCCCCC(=O)NC1C(C(C(OC1OCC(C(=O)NCCCCC)OP(=O)(O)OCC(COC(=O)C)OC(=O)C)CO)O)O
FormulaC39 H73 N2 O15 P
Name[(2~{S})-2-acetyloxy-3-[[(2~{S})-3-[(2~{R},3~{S},4~{S},5~{S},6~{S})-6-(hydroxymethyl)-3-(octadecanoylamino)-4,5-bis(oxidanyl)oxan-2-yl]oxy-1-oxidanylidene-1-(pentylamino)propan-2-yl]oxy-oxidanyl-phosphoryl]oxy-propyl] ethanoate
ChEMBL
DrugBank
ZINC
PDB chain7zgy Chain A Residue 1202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7zgy The cryo-EM structure of the S-layer deinoxanthin-binding complex of Deinococcus radiodurans informs properties of its environmental interactions.
Resolution2.54 Å
Binding residue
(original residue number in PDB)
R565 Y583 Q585 S602 D603 T605 R630
Binding residue
(residue number reindexed from 1)
R347 Y365 Q367 S384 D385 T387 R412
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:7zgy, PDBe:7zgy, PDBj:7zgy
PDBsum7zgy
PubMed35577074
UniProtQ9RRB6|SLPA_DEIRA Outer membrane protein SlpA (Gene Name=slpA)

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