Structure of PDB 7yb9 Chain A Binding Site BS02

Receptor Information

>7yb9 Chain A (length=430) Species: 9606 (Homo sapiens)

KKPKLLNKFDKTIKAELDAAEKLRKRGKIEEAVNAFKELVRKYPQSPRAR
YGKAQCEDDLAEKRRSNEVLRGAIETYQEVASLPDVPADLLKLSLKRRSD
RQQFLGHMRGSLLTLQRLVQLFPNDTSLKNDLGVGYLLIGDNDNAKKVYE
EVLSVTPNDGFAKVHYGFILKAQNKIAESIPYLKEGIESGDPGTDDGRFY
FHLGDAMQRVGNKEAYKWYELGHKRGHFASVWQRSLYNVNGLKAQPWWTP
KETGYTELVKSLERNWKLIRDEGLAVMDKAKGLFLPEDENLREKGDWSQF
TLWQQGRRNENACKGAPKTCTLLEKFPETTGCRRGQIKYSIMHPGTHVWP
HTGPTNCRLRMHLGLVIPKEGCKIRCANETKTWEEGKVLIFDDSFEHEVW
QDASSFRLIFIVDVWHPELTPQQRRSLPAI

Ligand information

• Ligand ID: MN
• InChI: InChI=1S/Mn/q+2
• InChIKey: WAEMQWOKJMHJLA-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mn+2]
  CACTVS 3.341: [Mn++]
• Formula: Mn
• Name: MANGANESE (II) ION
• DrugBank: DB06757
• PDB chain: 7yb9 Chain A Residue 801

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7yb9 Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with L-2-hydroxyglutarate and factor X-derived peptide (39mer-4Ser)
• Resolution: 1.54 Å
• Binding residue (original residue number in PDB): H679 H725
• Binding residue (residue number reindexed from 1): H351 H397
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 1.14.11.16: peptide-aspartate beta-dioxygenase.

Gene Ontology

Molecular Function

• GO:0062101 peptidyl-aspartic acid 3-dioxygenase activity

Biological Process

• GO:0018193 peptidyl-amino acid modification
• GO:0042264 peptidyl-aspartic acid hydroxylation

External links

• PDB: RCSB:7yb9, PDBe:7yb9, PDBj:7yb9
• PDBsum: 7yb9
• UniProt: Q12797|ASPH_HUMAN Aspartyl/asparaginyl beta-hydroxylase (Gene Name=ASPH)