Structure of PDB 7vzg Chain A Binding Site BS02

Receptor Information
>7vzg Chain A (length=854) Species: 458033 (Chloracidobacterium thermophilum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KRWYQKLELPMPPERIFGAHMMLIGGLACLIGTYFFASMTMWNDGYVNLT
LRPRLISLGIYDPYDTEQIQRVWLPLIGEFSTSKLPFFGQYPLTMTDFRL
FGWGCFHIGLGLWLVYAGAAHYYGARGGATIGEIFWLLPYVPGLKGLCQI
KWFTPEGPWYKVGLPWGSFANTPWPILRRTYADALSPHTIYIGLLFFIWG
FVLWFVLDKPPVPLQPAQVMTPNGLMPLEQAPFPYGWFDPYLNQVMHPMN
TINGETTMCFVWGVLFVALGAYWWYRPPRSINITHLEDTKAVFHVHLTAI
GYVSFALAIVGFLALRNHPSYLMLNDMNVIIYGKKIVNPGRMIHNMITFN
HVQVGLLYVAAGVFHGGQYLHGLNISGAYKQARSKFITWFQNPDLQTKIV
GTTMFVSFVTVVFGYGMICWNTGAELDLNFGIYQFRSFRAIQMDGEAGNI
GYRVFRPKNPWDPTAGGDWVKNPDGTAKLVKARNLQVGDRILNEELGIGS
SPTYSFTTIEEINYKPEWGQPKLYAVQWGSWTHFLRKVNPLFWVDKGIWY
LQNQKTFEATRKADEAYLAAHLKAVSLLNQIDDAQTEEAKQKAQAELDKF
RPELEKAHANMLEWNERLASTPAVLYSNLRDQHRDGEINDAIFFWLMIGG
WLFGFIPLLRIAFHNYQSPWYRDFEWRKQSPDFPCIGPVKGGTCGVSIQD
QLWFCILFSIKPLSAIAWYLDGGWIATMMARGNEAYYLTHNISHTGGVFL
YMWNETTWIWTDNHLTAMLLLGHLIWFVSFALWFKDRGSRAEGGDIQSRW
VRLMGKRLGIKTLQEVRFPVSNLATAKLWGTVFFYTGTFVLVFLYFADGF
FQNR
Ligand information
Ligand ID2GO
InChIInChI=1S/C55H72N4O6.Zn/c1-13-39-34(7)41-29-46-48(38(11)60)36(9)43(57-46)27-42-35(8)40(52(58-42)50-51(55(63)64-12)54(62)49-37(10)44(59-53(49)50)28-45(39)56-41)23-24-47(61)65-26-25-33(6)22-16-21-32(5)20-15-19-31(4)18-14-17-30(2)3;/h25,27-32H,13-24,26H2,1-12H3,(H3,56,57,58,59,60,62,63);/q;+2/p-2/b33-25+,41-29-,42-27-,43-27-,44-28-,45-28-,46-29-,52-50-;/t31-,32-;/m1./s1
InChIKeyWIUVDOQKCIQUQM-HCIDKWDRSA-L
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6CCC1=C(C2=Cc3c(c(c4n3[Zn]56[N]2=C1C=C7N5C8=C(C(=C(C8=C7C)O)C(=O)OC)C9=[N]6C(=C4)C(=C9CCC(=O)OC/C=C(\C)/CCC[C@H](C)CCC[C@H](C)CCCC(C)C)C)C)C(=O)C)C
OpenEye OEToolkits 1.7.6CCC1=C(C2=Cc3c(c(c4n3[Zn]56[N]2=C1C=C7N5C8=C(C(=C(C8=C7C)O)C(=O)OC)C9=[N]6C(=C4)C(=C9CCC(=O)OCC=C(C)CCCC(C)CCCC(C)CCCC(C)C)C)C)C(=O)C)C
ACDLabs 12.01O=C(OC)C=3C=2C=1C(=C(C=4N=1[Zn]86N9C=2C(C=3O)=C(C9=CC=7C(=C(C(=Cc5c(C(=O)C)c(c(C=4)n56)C)N=78)C)CC)C)C)CCC(=O)OC\C=C(/C)CCCC(C)CCCC(C)CCCC(C)C
CACTVS 3.385CCC1=C(C)C2=Cc3n4[Zn]5|6|N2=C1C=c7n5c8=C(C9=N|6C(=Cc4c(C)c3C(C)=O)C(=C9CCC(=O)OC\C=C(/C)CCC[C@H](C)CCC[C@H](C)CCCC(C)C)C)C(=C(O)c8c7C)C(=O)OC
CACTVS 3.385CCC1=C(C)C2=Cc3n4[Zn]5|6|N2=C1C=c7n5c8=C(C9=N|6C(=Cc4c(C)c3C(C)=O)C(=C9CCC(=O)OCC=C(C)CCC[CH](C)CCC[CH](C)CCCC(C)C)C)C(=C(O)c8c7C)C(=O)OC
FormulaC55 H70 N4 O6 Zn
Name[methyl 9-acetyl-14-ethyl-20-hydroxy-4,8,13,18-tetramethyl-3-{3-oxo-3-[(3,7,11,15-tetramethylhexadec-2-en-1-yl)oxy]propyl}-3,4,20,21-tetradehydrophorbine-21-carboxylatato(2-)-kappa~4~N~23~,N~24~,N~25~,N~26~]zinc
ChEMBL
DrugBank
ZINC
PDB chain7vzg Chain A Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7vzg Structure of the Acidobacteria homodimeric reaction center bound with cytochrome c.
Resolution2.61 Å
Binding residue
(original residue number in PDB)
K722 S725 W729 I736 M763 T767 H784 W787 L852 V853 Y856
Binding residue
(residue number reindexed from 1)
K711 S714 W718 I725 M752 T756 H773 W776 L841 V842 Y845
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0009579 thylakoid
GO:0016020 membrane

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:7vzg, PDBe:7vzg, PDBj:7vzg
PDBsum7vzg
PubMed36517472
UniProtG2LDR8

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