Structure of PDB 7vky Chain A Binding Site BS02

Receptor Information
>7vky Chain A (length=706) Species: 945713 (Ignavibacterium album JCM 16511) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SEKYFVKNGQPHFLISGEVHYFRINPKLWRNHLQLLKQTGADTVSTYIPW
DWHEIEEDDFDFEGKTHPARNLIRFIKLCKEENLDLIVKPGPYILAEYEN
QGLPSWLLKKLSKNAFALDENGNVISPDLVSYLSDEFLEYTFKWYDKVMP
IISKHQKEHYGPITMMQLCNEIGVFQWLSGKSDYNPKVINLYKEFIIQRY
KTIEKLNSVYSTNYNSFDDLKAPSGKIKLRSDYCAYFDFHLFFREYYNKY
ISILKNKIRSFGINIKLTHNIPGWIYGNASELPMLISTYSEIMKNHPDII
FGLDHIPEFVSFRNAHSDLACNKILEAMQPEAPVWAAEFQAGTREHHVKA
YAKDLETFYIASLAHGIKGFNYYMFSQGINPEGKGFYGKTFYFQTALDAA
SNKLALYDSIKKVNRFIRKEQKDLLRTNVNSEICVGFYKPYFFTELISSQ
LLKEKKLNVEELGLYIDPRFLREEILFNGLLRGLQTLNYNYDVVDLENCD
LKSLTAYKQLWITSAEFMDAETQNLLSEFVLNGGNLILYPAVPTLDNYLN
RCEILKNNFGIEFITKDSSHKVSAFGIEDVFTAFSKKQIYNDTNSKPIAF
TQENEICGIRKKIGKGELTILGFAFGYTSDEHLELIDKLVKLNKIKRELF
VSDKDIQFVVRENNKSRYIFFLNYHNERKTFNYRKSSKSEEISIAPFSYK
VIKENK
Ligand information
Ligand IDBGC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-VFUOTHLCSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.370OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O
CACTVS 3.370OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.6C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
ACDLabs 12.01OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namebeta-D-glucopyranose;
beta-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL1614854
DrugBankDB02379
ZINCZINC000003833800
PDB chain7vky Chain C Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7vky Characterization and structural analyses of a novel glycosyltransferase acting on the beta-1,2-glucosidic linkages.
Resolution2.0 Å
Binding residue
(original residue number in PDB)		Y52 A101 E102 N175 E176 E343 R349 Y378
Binding residue
(residue number reindexed from 1)		Y47 A96 E97 N170 E171 E338 R344 Y373
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004565 beta-galactosidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
Cellular Component
GO:0005773 vacuole

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7vky, PDBe:7vky, PDBj:7vky
PDBsum7vky
PubMed35065074
UniProtI0AIT9

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