Structure of PDB 7rd8 Chain A Binding Site BS02

Receptor Information
>7rd8 Chain A (length=929) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EREIHPDTTPVYDRNRYVSNELSNAKYNAVTFVPTLLYEQFKFFYNLYFL
VVALSQAVPALRIGYLSSYIVPLAFVLTVTMAKEAIDDIQRRRRDRESNN
ELYHVITRNRSIPSKDLKVGDLIKVHKGDRIPADLVLLQSSEPSGESFIK
TDQLDGETDWKLRVACPLTQNLINRISITASAPEKSIHKFLGKVTYKDST
SNPLSVDNTLWANTVLASSGFCIACVVYTGRDTRQAMNTTTAKVKTGLLE
LEINSISKILCACVFALSILLVAFAGFHNDDWYIDILRYLILFSTIIPVS
LRVNLDLAKSVYAHQIEHDKTIPETIVRTSTIPEDLGRIEYLLSDKTGTL
TQNDMQLKKIHLGTVSYTSETLDIVSDYVQSLVKDMSFRVRDMILTLAIC
HNVTPTFEDDELTYQAASPDEIAIVKFTESVGLSLFKRDRHSISLLHEHS
GKTLNYEILQVFPFNSDSKRMGIIVRDEQLDEYWFMQKGADTVMSKIVES
NDWLEEETGNMAREGLRTLVIGRKKLNKKIYEQFQKEITKYLEHDLELLG
LTGVEDKLQKDVKSSIELLRNAGIKIWMLTGDKVETARCVSISAKLISRG
QYVHTITKVACLLIDGESLGMFLKHYEQEFFDVVVHLPTVIACRCTPQQK
ADVALVIRKMTGKRVCCIGDGGNDVSMIQCADVGVGIVGKEGKQASLAAD
FSITQFCHLTELLLWHGRNSYKRSAKLAQFVMHRGLIIAICQAVYSICSL
FEPIALYQGWLMVGYATCYTMAPVFSLTLDHDIEESLTKIYPELYKELTE
GKSLSYKTFFVWVLLSLFQGSVIQLFSQAFTSLLDTDFTRMVAISFTALV
VNELIMVALEIYTWNKTMLVTEIATLLFYIVSVPFLGDYFDLGYMTTVNY
YAGLLVILLISIFPVWTAKAIYRRLHPPS
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain7rd8 Chain A Residue 1202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7rd8 Structural basis of the P4B ATPase lipid flippase activity.
Resolution5.64 Å
Binding residue
(original residue number in PDB)		D882 G883 G884 N885 D886
Binding residue
(residue number reindexed from 1)		D670 G671 G672 N673 D674
Annotation score1
Enzymatic activity
Enzyme Commision number 7.6.2.1: P-type phospholipid transporter.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0000287 magnesium ion binding
GO:0005215 transporter activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity
GO:0046872 metal ion binding
GO:0090555 phosphatidylethanolamine flippase activity
GO:0090556 phosphatidylserine floppase activity
GO:0140326 ATPase-coupled intramembrane lipid transporter activity
GO:0140346 phosphatidylserine flippase activity
GO:0180013 lysophosphatidylserine flippase activity
Biological Process
GO:0006869 lipid transport
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006897 endocytosis
GO:0007033 vacuole organization
GO:0015031 protein transport
GO:0015914 phospholipid transport
GO:0045332 phospholipid translocation
GO:0098629 trans-Golgi network membrane organization
GO:0140331 aminophospholipid translocation
Cellular Component
GO:0000139 Golgi membrane
GO:0005768 endosome
GO:0005770 late endosome
GO:0005794 Golgi apparatus
GO:0005802 trans-Golgi network
GO:0005886 plasma membrane
GO:0010008 endosome membrane
GO:0016020 membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7rd8, PDBe:7rd8, PDBj:7rd8
PDBsum7rd8
PubMed34645814
UniProtP40527|ATC7_YEAST Phospholipid-transporting ATPase NEO1 (Gene Name=NEO1)

[Back to BioLiP]