Structure of PDB 7prt Chain A Binding Site BS02

Receptor Information
>7prt Chain A (length=384) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FKNSTYSRSSVDVLYTFANCSGLDLIFGLNALLRTADLQWNSSNAQLLLD
YCSSKGYNISWELGNEPNSFLKKADIFINGSQLGEDFIQLHKLLRKSTFK
NAKLYGPDVGQPRRKTAKMLKSFLKAGGEVIDSVTWHHYYLNGRTATRED
FLNPDVLDIFISSVQKVFQVVESTRPGKKVWLGETSSAYGGGAPLLSDTF
AAGFMWLDKLGLSARMGIEVVMRQVFFGAGNYHLVDENFDPLPDYWLSLL
FKKLVGTKVLMASVQGSKRRKLRVYLHCTNTDNPRYKEGDLTLYAINLHN
VTKYLRLPYPFSNKQVDKYLLRPLGPHGLLSKSVQLNGLTLKMVDDQTLP
PLMEKPLRPGSSLGLPAFSYSFFVIRNAKVAACI
Ligand information
Ligand ID8I4
InChIInChI=1S/C7H12O7/c8-2-1(7(13)14)3(9)5(11)6(12)4(2)10/h1-6,8-12H,(H,13,14)/t1-,2-,3?,4+,5+,6-/m1/s1
InChIKeyFMRFYBAGJDOHAJ-ZREPEFIBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7[C@H]1([C@@H](C([C@H]([C@@H](C1C(=O)O)O)O)O)O)O
CACTVS 3.385O[C@@H]1[C@@H](O)[C@H](O)[C@H]([C@@H](O)[C@@H]1O)C(O)=O
OpenEye OEToolkits 2.0.7C1(C(C(C(C(C1O)O)O)O)O)C(=O)O
CACTVS 3.385O[CH]1[CH](O)[CH](O)[CH]([CH](O)[CH]1O)C(O)=O
FormulaC7 H12 O7
Name(2R,3S,5R,6R)-2,3,4,5,6-pentakis(oxidanyl)cyclohexane-1-carboxylic acid;
(2R)-5-[(E)-2-(2,4-dinitrophenyl)ethenyl]-2-[(1R)-2-oxidanyl-2-oxidanylidene-1-(2-thiophen-2-ylethanoylamino)ethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid
ChEMBL
DrugBank
ZINC
PDB chain7prt Chain D Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7prt Mechanism-based heparanase inhibitors reduce cancer metastasis in vivo.
Resolution1.7 Å
Binding residue
(original residue number in PDB)
N224 Y298 E343 Y348 G349 G350 Q383 Y391
Binding residue
(residue number reindexed from 1)
N65 Y139 E184 Y189 G190 G191 Q224 Y232
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.166: heparanase.
Gene Ontology
Molecular Function
GO:0016798 hydrolase activity, acting on glycosyl bonds
Cellular Component
GO:0016020 membrane

View graph for
Molecular Function

View graph for
Cellular Component
External links
PDB RCSB:7prt, PDBe:7prt, PDBj:7prt
PDBsum7prt
PubMed35881786
UniProtQ9Y251|HPSE_HUMAN Heparanase (Gene Name=HPSE)

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