Structure of PDB 7plj Chain A Binding Site BS02

Receptor Information
>7plj Chain A (length=266) Species: 243230 (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MDIDNYRVKPGKRVKLSDWATNDDAGLSKEEGQAQTAKLAGELAEWQERL
YAEGKQSLLLILQARDAAGKDGAVKKVIGAFNPAGVQITSFKQPSAEELS
HDFLWRIHQKAPAKGYVGVFNRSQYEDVLVTRVYDMIDDKTAKRRLEHIR
HFEELLTDNATRIVKVYLHISPEEQKERLQARLDNPGKHWKFNPGDLKDR
SNWDKFNDVYEDALTTSTDDAPWYVVPADRKWYRDLVLSHILLGALKDMN
PQFPAIDYDPSKVVIH
Ligand information
Ligand IDATP
InChIInChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyZKHQWZAMYRWXGA-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
FormulaC10 H16 N5 O13 P3
NameADENOSINE-5'-TRIPHOSPHATE
ChEMBLCHEMBL14249
DrugBankDB00171
ZINCZINC000004261765
PDB chain7plj Chain A Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7plj Structure of Polyphosphate kinase 2 from Deinococcus radiodurans, in complex with ATP and polyphosphates.
Resolution1.64 Å
Binding residue
(original residue number in PDB)		D66 A67 G69 K70 D71 S90 K92 N121 R122 R182 W190 K191
Binding residue
(residue number reindexed from 1)		D66 A67 G69 K70 D71 S90 K92 N121 R122 R182 W190 K191
Annotation score5
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0008976 polyphosphate kinase activity
GO:0016776 phosphotransferase activity, phosphate group as acceptor
GO:0046872 metal ion binding
Biological Process
GO:0006797 polyphosphate metabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7plj, PDBe:7plj, PDBj:7plj
PDBsum7plj
PubMed
UniProtQ9RY20

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