Structure of PDB 7lcc Chain A Binding Site BS02

Receptor Information

>7lcc Chain A (length=1369) Species: 32630 (synthetic construct)

EDAILEHSCGGMTVRCEFCLSLNFSDEKPSDGKFTRCCSKGKVCPNDIHF
PDYPAYLKRLMTNEDSDSKNFMENIRSINSSFAFASMGANIASPSGYGPY
CFRIHGQVYHRTGTLHPSDGVSRKFAQLYILDTAEATSKRLAMPENQGCS
ERLMININNLMHEINELTKSYKMLHEVEKEAQSEAAAKGIAPTEVTMAIK
YDRNSDPGRYNSPRVTEVAVIFRNEDGEPPFERDLLIHCKPDPNNPNATK
MKQISILFPTLDAMTYPILFPHGEKGWGTDIALRRVTQMQYYGFHLSVRD
TFNPILNAGKLTQQFIVDSYSKMEANRINFIKANQSKLRVEKYSGLMDYL
KSRSENDNVPIGKMIILPSSFEGSPRNMQQRYQDAMAIVTKYGKPDLFIT
MTCNPKWADITNNLQRWQKVENRPDLVARVFNIKLNALLNDICKFHLFGK
VIAKIHVIEFQKRGLPHAHILLILDSESKLRSEDDIDRIVKAEIPDEDQC
PRLFQIVKSNMVHGPCGIQNPNSPCMENGKCSKGYPKEFQNATIGNIDGY
PKYKRRSGSTMSIGNKVVDNTWIVPYNPYLCLKYNCHINVEVCASIKSVK
YLFKYIYKGHDCANIQISEKNIINHDEVQDFIDSRYVSAPEAVWRLFAMR
MHDQSHAITRLAIHLPNDQNLYFHTDDFAEVLDRAKRHNSTLMAWFLLNR
EDSDARNYYYWEIPQHYVFNNSLWTKRRKGGNKVLGRLFTVSFREPERYY
LRLLLLHVKGAISFEDLRTVGGVTYDTFHEAAKHRGLLLDDTIWKDTIDD
AIILNMPKQLRQLFAYICVFGCPSAADKLWDENKSHFIEDFCWKLHRREG
ACVNCEMHALNEIQEVFTLHGMKCSHFKLPDYPLLMNANTCDQLYEQQQA
EVLINSLNDEQLAAFQTITSAIEDQTVHPKCFFLDGPGGSGQTYLYKVLT
HYIRGRGGTVLPTASTGIAANLLLGGRTFHSQYKLPIPLNETSISRLDIK
SEVAKTIKKAQLLIIDECTMASSHAINAIDRLLREIMNLNVAFGGKVLLL
GGDFRQCLSIVPHAMRSAIVQTSLKYCNVWGCFRKLSLKTNMRSEDSAYS
EWLVKLGDGKLDSSFHLGMDIIEIPHEMICNGSIIEATFGNSISIDNIKN
ISKRAILCPKNEHVQKLNEEILDILDGDFHTYLSDDSIDSTDDAEKENFP
IEFLNSITPSGMPCHKLKLKVGAIIMLLRNLNSKWGLCNGTRFIIKRLRP
NIIEAEVLTGSAEGEVVLIPRIDLSPSDTGLPFKLIRRQFPVMPAFAMTI
NKSQGQTLDRVGIFLPEPVFAHGQLYVAFSRVRRACDVKVKVVNTSSQGK
LVKHSESVFTLNVVYREIL

Ligand information

• Ligand ID: ZN
• InChI: InChI=1S/Zn/q+2
• InChIKey: PTFCDOFLOPIGGS-UHFFFAOYSA-N
• SMILES:
  CACTVS 3.341: [Zn++]
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Zn+2]
• Formula: Zn
• Name: ZINC ION
• ChEMBL: CHEMBL1236970
• DrugBank: DB14532
• PDB chain: 7lcc Chain A Residue 1501

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7lcc The large bat Helitron DNA transposase forms a compact monomeric assembly that buries and protects its covalently bound 5'-transposon end.
• Resolution: 3.66 Å
• Binding residue (original residue number in PDB): C125 C128 C146 C147
• Binding residue (residue number reindexed from 1): C16 C19 C37 C38
• Annotation score: 4

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sun Dec 1 08:40:54 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7lcc', asym_id = 'A', bs = 'BS02', title = "The large bat Helitron DNA transposase forms a c...protects its covalently bound 5'-transposon end. "

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7lcc', asym_id='A', bs='BS02', title="The large bat Helitron DNA transposase forms a c...protects its covalently bound 5'-transposon end. ")

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0000723,0003678,0006281', uniprot = '', pdbid = '7lcc', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000723,0003678,0006281', uniprot='', pdbid='7lcc', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>