Structure of PDB 7k89 Chain A Binding Site BS02

Receptor Information
>7k89 Chain A (length=504) Species: 9913 (Bos taurus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SSQVEHPAGGYKKLFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFE
VGSEPFYHLFDGQALLHKFDFKEGHVTYHRRFIRTDAYVRAMTEKRIVIT
EFGTCAFEVTDNALVNIYPVGEDYYACTETNFITKVNPETLETIKQVDLC
NYVSVNGATAHPHIENDGTVYNIGNCFIAYNIVKIPPLQADKEDPISKSE
IVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKINLFKFLSGANYMDCF
ESNETMGVWLHIADKKRKKYINNKYRTSPFNLFHHINTYEDHEFLIVDLC
CWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKADT
GKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQINYQKYGGK
PYTYAYGLGLNHFVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDAL
EEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGL
FKKS
Ligand information
Ligand IDW4J
InChIInChI=1S/C16H24FNO2/c17-14-7-6-13(15(19)8-9-18)10-16(14)20-11-12-4-2-1-3-5-12/h6-7,10,12,15,19H,1-5,8-9,11,18H2/t15-/m1/s1
InChIKeyCYDVSJHNBXQOGZ-OAHLLOKOSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1cc(c(cc1[C@@H](CCN)O)OCC2CCCCC2)F
OpenEye OEToolkits 2.0.7c1cc(c(cc1C(CCN)O)OCC2CCCCC2)F
ACDLabs 12.01C(C(c1ccc(c(c1)OCC2CCCCC2)F)O)CN
CACTVS 3.385NCC[CH](O)c1ccc(F)c(OCC2CCCCC2)c1
CACTVS 3.385NCC[C@@H](O)c1ccc(F)c(OCC2CCCCC2)c1
FormulaC16 H24 F N O2
Name(1R)-3-amino-1-[3-(cyclohexylmethoxy)-4-fluorophenyl]propan-1-ol
ChEMBL
DrugBank
ZINC
PDB chain7k89 Chain A Residue 605 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7k89 Rational Alteration of Pharmacokinetics of Chiral Fluorinated and Deuterated Derivatives of Emixustat for Retinal Therapy.
Resolution2.15 Å
Binding residue
(original residue number in PDB)		F61 F103 V134 T147 E148 Y275
Binding residue
(residue number reindexed from 1)		F60 F102 V115 T128 E129 Y246
Annotation score1
Enzymatic activity
Enzyme Commision number 3.1.1.64: retinoid isomerohydrolase.
5.3.3.22: lutein isomerase.
Gene Ontology
Molecular Function
GO:0001786 phosphatidylserine binding
GO:0003834 beta-carotene 15,15'-dioxygenase activity
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0016787 hydrolase activity
GO:0016853 isomerase activity
GO:0031210 phosphatidylcholine binding
GO:0042802 identical protein binding
GO:0046872 metal ion binding
GO:0050251 retinol isomerase activity
GO:0052884 all-trans-retinyl-palmitate hydrolase, 11-cis retinol forming activity
GO:0052885 all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity
GO:1901612 cardiolipin binding
Biological Process
GO:0006629 lipid metabolic process
GO:0007601 visual perception
GO:0042572 retinol metabolic process
GO:0042574 retinal metabolic process
GO:1901827 zeaxanthin biosynthetic process
Cellular Component
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005886 plasma membrane
GO:0016020 membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7k89, PDBe:7k89, PDBj:7k89
PDBsum7k89
PubMed34081480
UniProtQ28175|RPE65_BOVIN Retinoid isomerohydrolase (Gene Name=RPE65)

[Back to BioLiP]