Structure of PDB 7k4f Chain A Binding Site BS02

Receptor Information
>7k4f Chain A (length=614) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RESWAQSRDEQNLLQQKRIWESPLLLAAKDNDVQALNKLLKYEDCKVHQR
GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAV
VNQNMNLVRALLARRASVSARATGTAFRRSPCNLIYFGEHPLSFAACVNS
EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDRH
GDHLQPLDLVPNHQGLTPFKLAGVEGNTVMFQHLMQKRKHTQWTYGPLTS
TLYDLTEIDSSGDEQSLLELIITTKKREARQILDQTPVKELVSLKWKRYG
RPYFCMLGAIYLLYIICFTMCCIYRPLKPRTNNRTSPRDNTLLQQKLLQE
AYMTPKDDIRLVGELVTVIGAIIILLVEVPDIFRMGVTRFFGQTILGGPF
HVLIITYAFMVLVTMVMRLISASGEVVPMSFALVLGWCNVMYFARGFQML
GPFTIMIQKMIFGDLMRFCWLMAVVILGFASAFYIIFQTEDPEELGHFYD
YPMALFSTFELFLTIIDGPANYNVDLPFMYSITYAAFAIIATLLMLNLLI
AMMGDTHWRVAHERDELWRAQIVATTVMLERKLPRCLWPRSGICGREYGL
GDRWFLRVEDRQDL
Ligand information
Ligand ID5GK
InChIInChI=1S/C23H28F3N3O/c24-23(25,26)20-3-1-2-19(14-20)18-5-7-21(8-6-18)29-12-10-28(11-13-29)16-17-4-9-22(30)27-15-17/h1-4,9,14-15,18,21H,5-8,10-13,16H2,(H,27,30)/t18-,21+
InChIKeyDMSJDEOGYRYVRN-RVWIWJKTSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01C1(NC=C(C=C1)CN4CCN(C3CCC(c2cc(ccc2)C(F)(F)F)CC3)CC4)=O
CACTVS 3.385FC(F)(F)c1cccc(c1)[CH]2CC[CH](CC2)N3CCN(CC3)CC4=CNC(=O)C=C4
OpenEye OEToolkits 2.0.7c1cc(cc(c1)C(F)(F)F)C2CCC(CC2)N3CCN(CC3)CC4=CNC(=O)C=C4
CACTVS 3.385FC(F)(F)c1cccc(c1)[C@@H]2CC[C@@H](CC2)N3CCN(CC3)CC4=CNC(=O)C=C4
FormulaC23 H28 F3 N3 O
Name5-[(4-{cis-4-[3-(trifluoromethyl)phenyl]cyclohexyl}piperazin-1-yl)methyl]pyridin-2(1H)-one
ChEMBLCHEMBL4796516
DrugBank
ZINC
PDB chain7k4f Chain A Residue 702 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7k4f Inactivation-mimicking block of the epithelial calcium channel TRPV6.
Resolution3.75 Å
Binding residue
(original residue number in PDB)
G579 W583
Binding residue
(residue number reindexed from 1)
G554 W558
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005216 monoatomic ion channel activity
GO:0005262 calcium channel activity
Biological Process
GO:0006811 monoatomic ion transport
GO:0006816 calcium ion transport
GO:0055085 transmembrane transport
Cellular Component
GO:0016020 membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:7k4f, PDBe:7k4f, PDBj:7k4f
PDBsum7k4f
PubMed33246965
UniProtQ9H1D0|TRPV6_HUMAN Transient receptor potential cation channel subfamily V member 6 (Gene Name=TRPV6)

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