Structure of PDB 7e0d Chain A Binding Site BS02

Receptor Information
>7e0d Chain A (length=604) Species: 196112 (Streptomyces sp. X-119-6) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MTYEQLARELLLVGPAPTNEDLKLRYLDVLIDNGLNPPGPPKRILIVGAG
IAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQY
AEAGAMRLPSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFY
KSFKDGKTWTNGAPSPEFKEPDKRNHTWIRTNREQVRRAQYATDPSSINE
GFHLTGCETRLTVSDMVNQALEPVRDYYSVKQDDGTRVNKPFKEWLAGWA
DVVRDFDGYSMGRFLREYAEFSDEAVEAIGTIENMTSELHLAFFHSFLGR
SDIDPRATYWEIEGGSRMLPETLAKDLRDQIVMGQRMVRLEYYDPGTGPG
GPAVAIQTVPEGAATQTWTGDLAIVTIPFSSLRFVKVTPPFSYKKRRAVI
ETHYDQATKVLLEFSRRWWEFTEADWKRELDAIAPGLYDYYQQWGEDDAE
AAGGVRPATNAYGGGSTTDNPNRFMYYPSHPVPGTQGGVVLAAYSWSDDA
ARWDSFDDAERYGYALENLQSVHGRRIEVFYTGAGQTQSWLRDPYACGEA
AVYTPHQMTAFHLDVVRPEGPVYFAGEHVSLKHAWIEGAVETAVRAAIAV
NEAP
Ligand information
Ligand IDARG
InChIInChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+1/t4-/m0/s1
InChIKeyODKSFYDXXFIFQN-BYPYZUCNSA-O
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(CC(C(=O)O)N)CNC(=[NH2+])N
CACTVS 3.341N[C@@H](CCCNC(N)=[NH2+])C(O)=O
OpenEye OEToolkits 1.5.0C(C[C@@H](C(=O)O)N)CNC(=[NH2+])N
CACTVS 3.341N[CH](CCCNC(N)=[NH2+])C(O)=O
ACDLabs 10.04O=C(O)C(N)CCCN\C(=[NH2+])N
FormulaC6 H15 N4 O2
NameARGININE
ChEMBL
DrugBank
ZINC
PDB chain7e0d Chain A Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7e0d A new l-arginine oxidase engineered from l-glutamate oxidase.
Resolution2.7 Å
Binding residue
(original residue number in PDB)		R124 E305 W564 E617 A652 W653
Binding residue
(residue number reindexed from 1)		R107 E288 W496 E549 A584 W585
Annotation score2
Enzymatic activity
Enzyme Commision number 1.4.3.11: L-glutamate oxidase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0001716 L-amino-acid oxidase activity
GO:0016491 oxidoreductase activity
Biological Process
GO:0009063 amino acid catabolic process
Cellular Component
GO:0005576 extracellular region

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7e0d, PDBe:7e0d, PDBj:7e0d
PDBsum7e0d
PubMed33764624
UniProtQ8L3C7|LGOX_STRSQ L-glutamate oxidase precursor (Gene Name=lgoX)

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