Structure of PDB 7d7o Chain A Binding Site BS02

Receptor Information
>7d7o Chain A (length=372) Species: 226900 (Bacillus cereus ATCC 14579) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRAKTKLIHGIRIGEPSTGSVNVPIYQTSTYKQEAVGKHQGYEYSRTGNP
TRAALEEMIAVLENGHAGFAFGSGMAAITATIMLFSKGDHVILTDDVYGG
TYRVITKVLNRFGIEHTFVDTTNLEEVEEAIRPNTKAIYVETPTNPLLKI
TDIKKISTLAKEKDLLTIIDNTFMTPYWQSPISLGADIVLHSATKYLGGH
SDVVAGLVVVNSPQLAEDLHFVQNSTGGILGPQDSFLLLRGLKTLGIRME
EHETNSRAIAEFLNNHPKVNKVYYPGLESHQNHELATEQANGFGAIISFD
VDSEETLNKVLEKLQYFTLAESLGAVESLISIPSQMTHARRKELGITDTL
IRISVGIEDGEDLIEDLAQALA
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain7d7o Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7d7o Structural and Functional Characterization of Cystathionine gamma-lyase from Bacillus cereus ATCC 14579.
Resolution1.98 Å
Binding residue
(original residue number in PDB)		Y44 R46
Binding residue
(residue number reindexed from 1)		Y44 R46
Annotation score1
Enzymatic activity
Enzyme Commision number 4.4.1.8: Transferred entry: 4.4.1.13.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0003962 cystathionine gamma-synthase activity
GO:0004123 cystathionine gamma-lyase activity
GO:0016829 lyase activity
GO:0030170 pyridoxal phosphate binding
Biological Process
GO:0019343 cysteine biosynthetic process via cystathionine
GO:0019346 transsulfuration
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7d7o, PDBe:7d7o, PDBj:7d7o
PDBsum7d7o
PubMed33301683
UniProtQ818A3

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