Structure of PDB 7byv Chain A Binding Site BS02

Receptor Information
>7byv Chain A (length=428) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QNQIVSGAAWTDTAGNTIQAHGAGILQVGSTFYWFGEDKSHNSALFKAVS
CYTSSDLVNWSRQNDALSPIAGTMISTSNVVERPKVIFNQKNSEYVMWFH
SDSSNYGAAMVGVATAKTPCGPYTYKGSFKPLGADSRDESIFQDDDSAQT
AYLLYASDNNQNFKISRLDANYYNVTAQVSVMNGATLQAPGIVKHNGEYF
LIASHTSGWAPNPNKWFSASSLAGPWSAQQDIAPSATRTWYSQNAFDLPL
GSNAIYMGDRWRPSLLGSSRYIWYPLDFSSGAPQIVHADVWSVNVQAGTY
SVASGTSYEAENGQRGGSSTILSGSGFSGGKAVGYLGHGGTVTINNVQSN
GGSHWVALYFANGDSTYRNVTVSVNGGPSVLVDQPDSGGGNVVISVPVKL
NLNSGENSITFGSGQSNYAADLDKIIVY
Ligand information
Ligand IDGAL
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3+,4+,5-,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-FPRJBGLDSA-N
SMILES
SoftwareSMILES
CACTVS 3.370OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O
OpenEye OEToolkits 1.7.2C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.370OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
ACDLabs 12.01OC1C(O)C(OC(O)C1O)CO
OpenEye OEToolkits 1.7.2C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
FormulaC6 H12 O6
Namebeta-D-galactopyranose;
beta-D-galactose;
D-galactose;
galactose
ChEMBLCHEMBL300520
DrugBank
ZINCZINC000002597049
PDB chain7byv Chain C Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7byv Unique active-site and subsite features in the arabinogalactan-degrading GH43 exo-beta-1,3-galactanase from Phanerochaete chrysosporium .
Resolution2.5 Å
Binding residue
(original residue number in PDB)		N180 Q208 G228
Binding residue
(residue number reindexed from 1)		N160 Q188 G208
Annotation score4
Enzymatic activity
Enzyme Commision number 3.2.1.145: galactan 1,3-beta-galactosidase.
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0030246 carbohydrate binding
GO:0033943 galactan 1,3-beta-galactosidase activity
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7byv, PDBe:7byv, PDBj:7byv
PDBsum7byv
PubMed33093171
UniProtQ50KB2

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