Structure of PDB 7amv Chain A Binding Site BS02

Receptor Information
>7amv Chain A (length=1248) Species: 502057 (Vaccinia virus GLV-1h68) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AVISKVTYSLYDQKEINATDIIISHVKNDDDIGTVKDGRLGAMDGALCKT
CGKTELECFGHWGKVSIYKTHIVKPEFISEIIRLLNHICIHCGLLRSREP
YSDDINLKELSGHALRRLKDKILSKKKSCWNSECMQPYQKITFSKKKVCF
VNKLDDINVPNSLIYQKLISIHEKFWPLLEIHQYPANLFYTDYFPIPPLI
IRPAISNELTYLLGMIVKNCNLNADEQVIQKAVIEYDDIKIISNNTTSIN
LSYITSGKNNMIRSYIVARRKDQTARSVIGPSTSITVNEVGMPAYIRNTL
TEKIFVNAFTVDKVKQLLASNQVKFYFNKRLNQLTRIRKNKIHLLPGDWV
EVAVQEYTSIIFGRQPSLHRYNVIASSIRATEGDTIKISPGIANSQNADF
DGDEEWMILEQNPKAVIEQSILMYPTTLLKHDIHGAPVYGSIQDEIVAAY
SLFRIQDLCLDEVLNILGKYGREFDPKGKCKFSGKDIYTYLIGEKINYPG
LLKDGEIIANDVDSNFVVAMRHLSLAGLLSDHKSNVEGINFIIKSSYVFK
RYLSIYGFGVTFKDLRPNSTFTNKLEAINVEKIELIKEAYAKYLNDVRDG
KIVPLSKALEADYVESMLSNLTNLNIREIEEHMRQTLIDDPDNNLLKMAK
AGYKVNPTELMYILGTYGQQRIDGEPAETRVLGRVLPYYLPDSKDPEGRG
YILNSLTKGLTGSQYYFSMLVARSQSTDIVCETSRTGTLARKIIKKMEDM
VVDGYGQVVIGNTLIKYAANYTKILGSVCKPVDLIYPDESMTWYLEISAL
WNKIKQGFVYSQKQKLAKKTLAPFNFLVFVKPTTEDNAIKVKDLYDMIHN
VIDDVREKYFFTVSNIDFMEYIFLTHLNPSRIRITKETAITIFEKFYEKL
NYTLGGGTPIGIISAQVLSEKFTQQALSSFHTTEKSGAVKQKLGFNEFNN
LTNLSKNKTEIITLVSDDISKLQSVKINFEFVCLGELNPNITLRKETDKY
VVDIIVNRLYIKRAEITELVVEYMIERFISFSVIVKEWGMETFIEDEDNI
RFTVYLNFVEPEELNLSKFMMVLPGAANKGKISKFKIPISDYTGYDDFNQ
TKKLNKMTVELMNLKELGSFDLENVNVYPGVWNTYDIFGIEAAREYLCEA
MLNTYGEGFDYLYQPCDLLASLLCASYEPESVNKFKFGAASTLKRATFGD
NKALLNAALHKKSEPINDNSSCHFFSKVPNIGTGYYKYFIDLGLLMRM
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain7amv Chain A Residue 1301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7amv Structural basis of the complete poxvirus transcription initiation process.
Resolution2.8 Å
Binding residue
(original residue number in PDB)		D415 D417 D419
Binding residue
(residue number reindexed from 1)		D399 D401 D403
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0016779 nucleotidyltransferase activity
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7amv, PDBe:7amv, PDBj:7amv
PDBsum7amv
PubMed34556871
UniProtQ1PIV1

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