Structure of PDB 6za2 Chain A Binding Site BS02

Receptor Information
>6za2 Chain A (length=1081) Species: 431947 (Porphyromonas gingivalis ATCC 33277) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QRAMGKTADRSLMASGHWVKIRVDASGVYRLTDEQLRANGFSDPSKVGVF
GYGGGVLPEDLSRITTDDLPPVPVLRQGNALYFYAVGPVTWFYNPAKTTM
EHTVNTYSTHGYYFLSDAAGAPLQMSQYTGGGASAEALIDYYDELMLHEQ
ELYSPKESGRDLYGESFSAVNTRTVKFPLRGNTRSSGELGTVFSYIAKAR
SAGGGREMSLSANGILIFSDPFSMTSNEVSNSYLAGKKRRLYRSTPMNSL
VNELRLDANYSMTGDAVNLDFIEVATQNDLRYDGAPMHIRRFSNLPVLGG
ESCRFVISEVPESLVVLQANSSLTASLVPVKTVGDKTIEFVAPPKGQDRR
TINTFYAVDLSQASAPEILGAVPNQNLHGEEIPDLIIVSTQALLPEADRL
ATYRREKNGLKVLVVLQEQVFNEFSGGTPDATAYRLFAKMFYDRWKANAP
VGETFPMQMLLFGDGAHDNRKVSVAWQKPYLQQTEFLLTFQAVNSTNVNS
YVTDDYFGLLDDQPASVNIGWRNYNMAVGRFPVRTPAEARIAVDKTIRYE
EDRESGAWRIRACFAMPVRAFQDKKKMLETLQSGIILLNYAGHGGPAGWS
DEHLLTLNDIHNFNYKHMPIWITATCEEVFLHEKSGTPIMFSTTRVVYNT
QNEKINGFMLRRMFEKAKDGRYRTMGEIIRSAKQGMLSTVFPDSINQLSF
FLMGDPSVRMNLPTHKVQLTAINGQDPEGQYGTIMLKSLERVALKGKVTD
EKGTFDETFSGKVFLTVFDGRKKMTALEEEGNDLSLVYYDYPNVMYAGIA
EVKDGLFETSFIVPKDVNYSEHEGRINLYAYNESTKAEAMGVDFSIRVQP
GIPDEVTEDNTPPEIISCFLNDSTFRSGDEVNPTPLFMAEVFDLNGINIT
GSGVGHDITLCIDGRADLTYNLNAYFTSSATDAGVGTILFMIPALAEGDH
TARLTVWDIFNNAVHHDFSFRVVDGIAPDVADVILFPNPVRESATFRIFH
NRPGSDLNVVVEIYDFTGRLVNSLPVKTYSSSYGEPIEIKWDLTSKYGVK
IGNGFYLYRCVVNSPGGQTASMAKKMIVVAQ
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain6za2 Chain A Residue 2002 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6za2 Intermolecular latency regulates the essential C-terminal signal peptidase and sortase of the Porphyromonas gingivalis type-IX secretion system.
Resolution3.35 Å
Binding residue
(original residue number in PDB)		D936 T938 D970 D1035 N1039
Binding residue
(residue number reindexed from 1)		D859 T861 D893 D958 N962
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008234 cysteine-type peptidase activity
GO:0046872 metal ion binding
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:6za2, PDBe:6za2, PDBj:6za2
PDBsum6za2
PubMed34593635
UniProtB2RGP6

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