Structure of PDB 6ydm Chain A Binding Site BS02

Receptor Information

>6ydm Chain A (length=219) Species: 272623 (Lactococcus lactis subsp. lactis Il1403) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MFKAVLFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSRE
DSLQKILDLADKKVSAEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLL
KDLRSNKIKIALASASKNGPFLLERMNLTGYFDAIADPAEVAASKPAPDI
FIAAAHAVGVAPSESIGLEDSQAGIQAIKDSGALPIGVGRPEDLGDDIVI
VPDTSHYTLEFLKEVWLQK

Ligand information

Ligand ID

PDO

InChI

InChI=1S/C3H8O2/c4-2-1-3-5/h4-5H,1-3H2

InChIKey

YPFDHNVEDLHUCE-UHFFFAOYSA-N

SMILES

Software	SMILES
OpenEye OEToolkits 1.7.0	C(CO)CO
ACDLabs 11.02 CACTVS 3.352	OCCCO

Formula

C3 H8 O2

Name

1,3-PROPANDIOL

PDB chain

6ydm Chain A Residue 304 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6ydm Allomorphy as a mechanism of post-translational control of enzyme activity.
Resolution	2.1 Å
Binding residue (original residue number in PDB)	Q54 V64
Binding residue (residue number reindexed from 1)	Q54 V64
Annotation score	1

Enzymatic activity

Enzyme Commision number

5.4.2.6: beta-phosphoglucomutase.

Gene Ontology

	Molecular Function
GO:0000287	magnesium ion binding
GO:0008801	beta-phosphoglucomutase activity
GO:0016853	isomerase activity
GO:0046872	metal ion binding

	Biological Process
GO:0005975	carbohydrate metabolic process

	Cellular Component
GO:0005737	cytoplasm

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Molecular Function

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Cellular Component

External links

PDB	RCSB:6ydm, PDBe:6ydm, PDBj:6ydm
PDBsum	6ydm
PubMed	33139716
UniProt	P71447\|PGMB_LACLA Beta-phosphoglucomutase (Gene Name=pgmB)

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