Structure of PDB 6y8y Chain A Binding Site BS02

Receptor Information
>6y8y Chain A (length=572) Species: 7950 (Clupea harengus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LYFQSMETNPIPVVTVQTTPFDDQKPGTNGLRKKTTVFESKKNYLQNYIQ
SVLSSIDLRDRQGCTMVVGSDGRYFSRTAIEVIVQMAAANGIGRLVIGHN
GILSTPAVSCIIRKIKAIGGIILTASRNPGGPNGDFGIKFNVANGGPAPD
TVIDKIHQVSRTLEEYAICPDMRIDLSRLGRQDFDLENKFKPFRVEIVDS
VEVYLNLLRGIFDFNAIKGLLTGPDQLKMRVDAMSGVMGPYVRRILCDEL
GAPANSAVNCVPLEDFGGHYPDPNLTYATGLVDAMKGGEFGFGAAFDADG
DRCMILGQNAFFVNPSDSLAVVAANLSCIPYFRQVGVRGFARSMPTSTAI
DRVAKAMKVAVYETPAGWRFFGNLMDSGRCSFCGEESFGMGSDHIREKDG
LWTVLVWLSIMAARKQGVEDIVRDHWTKLGRNYFCRFDYEAIDPRAAFYL
MKDLEAVISDKAFCSQKFAVGNSVYSVEKADNFEYIDPVDGTVARNQGLR
IIFSESSRLIFRLSGTGVGVGATIRIYAESFERDPERHNREPQVVLGPLI
AIALKISDIHERTGRRGPTVIT
Ligand information
Ligand IDG1P
InChIInChI=1S/C6H13O9P/c7-1-2-3(8)4(9)5(10)6(14-2)15-16(11,12)13/h2-10H,1H2,(H2,11,12,13)/t2-,3-,4+,5-,6-/m1/s1
InChIKeyHXXFSFRBOHSIMQ-VFUOTHLCSA-N
SMILES
SoftwareSMILES
CACTVS 3.370OC[CH]1O[CH](O[P](O)(O)=O)[CH](O)[CH](O)[CH]1O
ACDLabs 12.01O=P(O)(OC1OC(C(O)C(O)C1O)CO)O
OpenEye OEToolkits 1.7.0C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)O)O)O)O)O
CACTVS 3.370OC[C@H]1O[C@H](O[P](O)(O)=O)[C@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.7.0C(C1C(C(C(C(O1)OP(=O)(O)O)O)O)O)O
FormulaC6 H13 O9 P
Name1-O-phosphono-alpha-D-glucopyranose;
ALPHA-D-GLUCOSE-1-PHOSPHATE;
1-O-phosphono-alpha-D-glucose;
1-O-phosphono-D-glucose;
1-O-phosphono-glucose
ChEMBL
DrugBankDB02843
ZINCZINC000004073375
PDB chain6y8y Chain A Residue 603 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6y8y Structure and Characterization of Phosphoglucomutase 5 from Atlantic and Baltic Herring-An Inactive Enzyme with Intact Substrate Binding.
Resolution1.95 Å
Binding residue
(original residue number in PDB)
S121 R297 E380 S382 R507 S509 G510 T511 R520
Binding residue
(residue number reindexed from 1)
S126 R302 E385 S387 R512 S514 G515 T516 R525
Annotation score5
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004614 phosphoglucomutase activity
GO:0016868 intramolecular phosphotransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0014706 striated muscle tissue development
GO:0030239 myofibril assembly
Cellular Component
GO:0005829 cytosol
GO:0005912 adherens junction
GO:0030055 cell-substrate junction
GO:0042383 sarcolemma

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:6y8y, PDBe:6y8y, PDBj:6y8y
PDBsum6y8y
PubMed33287293
UniProtA0A6P3VN15

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