Structure of PDB 6xb5 Chain A Binding Site BS02

Receptor Information
>6xb5 Chain A (length=240) Species: 7111 (Trichoplusia ni) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MGRTVLNESNKGLVENFSIPAELHERDGKRFASFGTTVPIHCCTPEQVAE
FANKTHHYCDVFTEQVLAPLDELVYVRIDENTAEKVFINRSKRILLVSSD
GVLAQWRSAPTFESSNRFLAGTPIVNKDGDLVSVVTARKGNHYAVSTFEG
EGGYFETSQPWKVLDPPEGAAVYGDRWFPSREEVRAYTLSLPGAAVSAGS
PPAPVLHRGGSGRLVLADARGRQLSHHYLHGVATTDVQYL
Ligand information
Ligand ID9BG
InChIInChI=1S/C20H26N10O14P2/c21-14-8-15(24-3-23-14)29(4-25-8)18-11(33)12(43-45(35,36)37)7(42-18)2-40-46(38,39)44-13-10(32)6(1-31)41-19(13)30-5-26-9-16(30)27-20(22)28-17(9)34/h3-7,10-13,18-19,31-33H,1-2H2,(H,38,39)(H2,21,23,24)(H2,35,36,37)(H3,22,27,28,34)/t6-,7-,10-,11-,12-,13-,18-,19-/m1/s1
InChIKeyOVXKSNAROFCXFB-INFSMZHSSA-N
SMILES
SoftwareSMILES
CACTVS 3.385NC1=NC(=O)c2ncn([CH]3O[CH](CO)[CH](O)[CH]3O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O[P](O)(O)=O)n5cnc6c(N)ncnc56)c2N1
OpenEye OEToolkits 2.0.6c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O[C@@H]4[C@@H]([C@H](O[C@H]4n5cnc6c5NC(=NC6=O)N)CO)O)OP(=O)(O)O)O)N
OpenEye OEToolkits 2.0.6c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OC4C(C(OC4n5cnc6c5NC(=NC6=O)N)CO)O)OP(=O)(O)O)O)N
ACDLabs 12.01c2nc1C(=O)N=C(N)Nc1n2C3C(C(C(O3)CO)O)OP(O)(OCC6OC(n5c4ncnc(N)c4nc5)C(C6OP(O)(=O)O)O)=O
CACTVS 3.385NC1=NC(=O)c2ncn([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O[P](O)(O)=O)n5cnc6c(N)ncnc56)c2N1
FormulaC20 H26 N10 O14 P2
Name2',5'-GpAp;
[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methyl [(2~{R},3~{R},4~{R},5~{R})-2-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl] hydrogen phosphate
ChEMBL
DrugBank
ZINC
PDB chain6xb5 Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6xb5 Structures of diverse poxin cGAMP nucleases reveal a widespread role for cGAS-STING evasion in host-pathogen conflict.
Resolution2.9 Å
Binding residue
(original residue number in PDB)
H57 R107 F148 Y154 E156
Binding residue
(residue number reindexed from 1)
H57 R107 F148 Y154 E156
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004518 nuclease activity

View graph for
Molecular Function
External links
PDB RCSB:6xb5, PDBe:6xb5, PDBj:6xb5
PDBsum6xb5
PubMed33191912
UniProtA0A7E5VPD6

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