Structure of PDB 6wyb Chain A Binding Site BS02

Receptor Information
>6wyb Chain A (length=739) Species: 69014 (Thermococcus kodakarensis KOD1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MILDTDYITEDGKPVIRIFKKENGEFKIEYDRTFEPYLYALLKDDSAIEE
VKKITAERHGTVVTVKRVEKVQKKFLGRPVEVWKLYFTHPQDVPAIMDKI
REHPAVIDIYEYDIPFAIRYLIDKGLVPMEGDEELKLLAFDIETLYEFAE
GPILMISYADEEGARVITWDLPYVDVVSTEREMIKRFLRVVKEKDPDVLI
TYDGDNFDFAYLKKRCEKLGINFALGRDGSEPKIQRMGDRFAVEVKGRIH
FDLYPVIRRTINLPTYTLEAVYEAVFGQPKEKVYAEEITTAWETGENLER
VARYSMEDAKVTYELGKEFLPMEAQLSRLIGQSLWDVSRSSTGNLVEWFL
LRKAYERNELAPNKPDEKELARRHQSHEGGYIKEPERGLWENIVYLDFRS
LYPSIIITHNVSPDTLNREGCKEYDVAPQVGHRFCKDFPGFIPSLLGDLL
EERQKIKKRMKATIDPIERKLLDYRQRAIKILANSLYGYYGYARARWYCK
ECAESVIAWGREYLTMTIKEIEEKYGFKVIYSDTDGFFATIPGADAETVK
KKAMEFLKYINAKLPGALELEYEGFYKRGLFVTKKKYAVIDEEGKITTRG
LEIVRRDWSEIAKETQARVLEALLKDGDVEKAVRIVKEVTEKLSKYEVPP
IHKQITRDLKDYKATGPHVAVAKRLAARGVKIRPGTVISYIVLKGSGRIV
DRAIPFDEKYDAEYYIEKQVLPAVERILRAFGYRKEDLR
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6wyb How a B family DNA polymerase has been evolved to copy RNA.
Resolution2.5 Å
Binding residue
(original residue number in PDB)		D540 K592 R606 G607 V611 R612 Y673 K674 H679
Binding residue
(residue number reindexed from 1)		D533 K585 R599 G600 V604 R605 Y662 K663 H668
Enzymatic activity
Enzyme Commision number 2.7.7.7: DNA-directed DNA polymerase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006260 DNA replication
GO:0071897 DNA biosynthetic process

View graph for
Molecular Function
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Biological Process
External links
PDB RCSB:6wyb, PDBe:6wyb, PDBj:6wyb
PDBsum6wyb
PubMed32817521
UniProtD0VWU9

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