Structure of PDB 6ubz Chain A Binding Site BS02

Receptor Information

>6ubz Chain A (length=791) Species: 1365250 (Pseudoalteromonas luteoviolacea DSM 6061)

CQYKIYPPLGIARVGNGPAIKPLSLSTPEVPWAHLYDTNVQYLVTQQELE
QLLEEAFGGNVINEISQIKTKLDERKAEKFKQEEIETITGLLGLSHLVPQ
QQLSRSLDNLELKSDDIVQQIKGALLKVLSDHYLHAVKKQAQNFYIYKCD
NPVEKLKLTDGDKVTWRVEVANKKSFWYDYNNALDLSLHTQGSGNLSKNV
SKHRLAPAMTAKRRNPNVITNSLRKQLVISSQGSVSSDNNTQVPLRGKFP
ANERHNVLQGSIECDNEGVLRFYAGNGISQALSPSSLNTDFADNSNWFDD
ICDGRVTAVVELKNGDTFEIQDEQSSAWVATTPPDYAPQIEPIVTMYDMV
SGAALKEQDLDNLTTQFSDVFPILYRLYRMQWVNQADFTDNAVNTQIREL
NSELGFAQLLDNSASAKSLREGIFNQFRNPLFDQDIDVDDPGQSSNEWVS
NSRIIPSKDETNIAAKPATSSLKLPFYPNDGIDYPGSPVQWFAIPPFMYQ
HLQNWAAGDFSVTQVEKESANTIEELGLFYSEQFKNSPNSALLCARGALD
ALYGGGFHPGVELTWPMRHNLIYSQNDYVSSVTPEINLLGLREFRLKQDL
QGLNSPNMYQDFGHVIAVDNVTASIDPNSDAAWLWRSTPGDLTKWMGIPW
QSAAASCQAVYTPEDFPIPSWWAANLPVHVLPLARYNKFKDSQSADLPEI
NGMTHSIAQGMSEETFEHLRLEQFSQRLDWLHTADLGFVGYHAEGGYTNG
LIQMVSQWKNMAMVMARPVENPGSSGIPNVVYVAYSQADKD

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 6ubz Chain A Residue 901

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6ubz Kinetic and structural evidence that Asp-678 plays multiple roles in catalysis by the quinoprotein glycine oxidase.
• Resolution: 1.83 Å
• Binding residue (original residue number in PDB): D360 A362 I365 A699 N700
• Binding residue (residue number reindexed from 1): D335 A337 I340 A674 N675
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0046872 metal ion binding

External links

• PDB: RCSB:6ubz, PDBe:6ubz, PDBj:6ubz
• PDBsum: 6ubz
• PubMed: 31615898
• UniProt: A0A161XU12