Structure of PDB 6trf Chain A Binding Site BS02

Receptor Information
>6trf Chain A (length=1319) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SPSINVALKAAFPSPPYLVELLETAASDNTTIYYSLLDRIAKGHFAEATT
DKALYEKFLEVLRDDGHMDPEALSAFKLALSLRTATPRVEAHYQYYTATV
EPSLSGTQEGCDQWFLIDGEQYCSPTLDTSHGKVKGEDQLRTLPFDRKFG
VGSRDVILYADITSKSFAPFHEVAMDLAKKGKASYRVRYRRSPSHSRESL
SVNGYGVELVLKRTDYIVEEIADIKPLEKSELAALGMKAASFVMQSEKPF
EALLKLTQDFPKYSNSLGSQNVSAEFEAEHRGNREVFLPEGSNVLWLNGL
HLIDRQIQPFGLVDLLTRERKLIKSVLDLGLTGQQAVDLLGHAEVAHAKS
GDDEPRRFDWRDDIEEGQVIIWLNNLEKDKRYKSFSPSIWVLIHHFGHGL
PQIPTGQAIDQAKVVYYLLENYGLAAATAYLEKSYEEQSTGQPNERIFNE
VIKDKSLRPDGVELSFKDIFISEKHEKQIHLSKHWVERLRAGGDVPTVFF
DGFPIPREDNWLRVMNHRLMQDLQALQQAGYFGMLNESMWLPGFFLEKAL
SRRNTLIFPEDKNELTVLNVNKIYIENHDLMSKVPVIEASKESTRDDWAA
LTVVADLDDIEGQELVYYALRFRKSNDGVRLDIVHNPKDTSRSPSVLAQR
LKSREDKLLDFTRFLDLETALETGEFEPDVAYDASLANFLASSNMKAGDN
FVILNGRVLGPITSADDFKKEDFEVFLQAERRTRILPVYKALEDLGLDDK
VSGPLSAAKLTSVTALSTITTLFKQWNSTYTSFEVGDASTATIFFVAVIN
PASEIGQRWVAVLKVLSELEGVHLRVFLNPTVMIEELPVKRFYRYVLSSS
PSFDESGKVKALSARFTGVPRETLLVVGMDVPPAWLVTSKVAVDDLDNLR
IKDIKAKRGTEHVEAIYELEHILIEGHSREIPGAHAPRGVQLVLETENNP
HFADTIIMANLGYFQFKANPGVYNIRLKEGRSSEIFTLESVGAKGWGPIP
GDDNTEVVLMDFQGTTLYPRLRRKPGMEEEDVLEPSKTEHAEINIFSVAS
GHLYERMLNIMMASVMHHTNHTVKFWFIEQFLSPSFKDFIPHMAAEYGFK
YEMVTYKWPHWLRQQKEKQREIWGYKILFLDVLFPLSLDKVIFVDADQIV
RTDMYDLVEHPLDGAPYGFAPMCDSRVEMEGYRFWKTGYWANYLKGKPYH
ISALYVVDLQRFRELAAGDRLRQQYHALSADPNSLANLDQDLPNHMQFTI
PIATLPQEWLWCETWCSDETLKDARTIDLCNNPMTKEPKLDRARRQVPEW
TKYDEEIAELARRVREEKP
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain6trf Chain A Residue 1603 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6trf Clamping, bending, and twisting inter-domain motions in the misfold-recognizing portion of UDP-glucose: Glycoprotein glucosyltransferase.
Resolution4.106 Å
Binding residue
(original residue number in PDB)		D1302 D1304 Q1305 D1435
Binding residue
(residue number reindexed from 1)		D1145 D1147 Q1148 D1278
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity
Biological Process
GO:0006486 protein glycosylation

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Molecular Function
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Biological Process
External links
PDB RCSB:6trf, PDBe:6trf, PDBj:6trf
PDBsum6trf
PubMed33352114
UniProtG0SB58

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