Structure of PDB 6slj Chain A Binding Site BS02

Receptor Information
>6slj Chain A (length=898) Species: 242619 (Porphyromonas gingivalis W83) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LSTVSGSVAKVSSEKLAEKPVANIMDALQGQVAGMQVMTTSGDPTAVASV
EIHGTGSLGASSAPLYIVDGMQTSLDVVATMNPNDFESMSVLKDASATSI
YGARAANGVVFIQTKKGKMSERGRITFNASYGISQILNTKPLDNMMTGDE
LLDFQVKAGFWGNNQTVQKVKDMILAGAEDLYGNYDSLKDEYGKTLFPVD
FNHDADWLKALFKTAPTSQGDISFSGGSQGTSYYASIGYFDQEGMAREPA
NFKRYSGRLNFESRINEWLKVGANLSGAIANRRSADYFGKYYMGSGTFGV
LTMPRYYNPFDVNGDLADVYYMYGATRPSMTEPYFAKMRPFSSESHQANV
NGFAQITPIKGLTLKAQAGVDITNTRTSSKRMPNNPYDSTPLGERRERAY
RDVSKSFTNTAEYKFSIDEKHDLTALMGHEYIEYEGDVIGASSKGFESDK
LMLLSQGKTGNSLSLPEHRVAEYAYLSFFSRFNYGFDKWMYIDFSVRNDQ
SSRFGSNNRSAWFYSVGGMFDIYNKFIQESNWLSDLRLKMSYGTTGNSEI
GNYNHQALVTVNNYTEDAMGLSISTAGNPDLSWEKQSQFNFGLAAGAFNN
RLSAEVDFYVRTTNDMLIDVPMPYISGFFSQYQNVGSMKNTGVDLSLKGT
IYQNKDWNVYASANFNYNRQEITKLFFGLNKYMLPNTGTIWEIGYPNSFY
MAEYAGIDKKTGKQLWYVPGQVKVTTSQYSADLETRIDKSVTPPITGGFS
LGASWKGLSLDADFAYIVGKWMINNDRYFTENGGGLMQLNKDKMLLNAWT
EDNKETDVPKLGQSPQFDTHLLENASFLRLKNLKLTYVLPNSLFAGQNVI
GGARVYLMARNLLTVTKYKGFDPEAGGNVGKNQYPNSKQYVAGIQLSF
Ligand information
Ligand IDC8E
InChIInChI=1S/C16H34O5/c1-2-3-4-5-6-7-9-18-11-13-20-15-16-21-14-12-19-10-8-17/h17H,2-16H2,1H3
InChIKeyFEOZZFHAVXYAMB-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O(CCCCCCCC)CCOCCOCCOCCO
CACTVS 3.341
OpenEye OEToolkits 1.5.0		CCCCCCCCOCCOCCOCCOCCO
FormulaC16 H34 O5
Name(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
ChEMBL
DrugBankDB04233
ZINCZINC000014881140
PDB chain6slj Chain A Residue 1102 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6slj Structural and functional insights into oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis.
Resolution3.04 Å
Binding residue
(original residue number in PDB)		S370 A462
Binding residue
(residue number reindexed from 1)		S256 A348
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0009279 cell outer membrane

View graph for
Cellular Component
External links
PDB RCSB:6slj, PDBe:6slj, PDBj:6slj
PDBsum6slj
PubMed32393857
UniProtQ7MXJ7

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